Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities

No raw data, no science: another possible source of the reproducibility crisis

(2020) Tsuyoshi Miyakawa   Molecular Brain

Data detectives, self-love, and humility: a research parasite's perspective

(2020) Claire Duvallet   GigaScience

Microbiome analyses of blood and tissues suggest cancer diagnostic approach

(2020) Gregory D. Poore et al.   NATURE

The National Microbiome Data Collaborative: enabling microbiome science

(2020) Elisha M. Wood-Charlson et al.   NATURE REVIEWS MICROBIOLOGY

Data sharing, management, use, and reuse: Practices and perceptions of scientists worldwide

(2020) Carol Tenopir et al.   PLoS One

Every fifth published metagenome is not available to science

(2020) Ester M. Eckert et al.   PLOS BIOLOGY

Planet Microbe: a platform for marine microbiology to discover and analyze interconnected ‘omics and environmental data

(2020) Alise J Ponsero et al.   NUCLEIC ACIDS RESEARCH

Hackathons as a means of accelerating scientific discoveries and knowledge transfer

(2018) Amel Ghouila et al.   GENOME RESEARCH

Opportunities and obstacles for deep learning in biology and medicine

(2018) Travers Ching et al.   Journal of the Royal Society Interface

A funder-imposed data publication requirement seldom inspired data sharing

(2018) Jessica L. Couture et al.   PLoS One

An empirical analysis of journal policy effectiveness for computational reproducibility

(2018) Victoria Stodden et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Meta-analysis and the science of research synthesis

(2018) Jessica Gurevitch et al.   NATURE

A data citation roadmap for scientific publishers

(2018) Helena Cousijn et al.   Scientific Data

OUP accepted manuscript

(2017)   NUCLEIC ACIDS RESEARCH

Reproducible and reusable research: are journal data sharing policies meeting the mark?

(2017) Nicole A. Vasilevsky et al.   PeerJ

Overcoming hurdles in sharing microbiome data

(2017)   Nature Microbiology

Measuring scientific impact beyond academia: An assessment of existing impact metrics and proposed improvements

(2017) James Ravenscroft et al.   PLoS One

Challenges: Crowdsourced solutions

(2016) Eric Bender   NATURE

Crowdsourcing biomedical research: leveraging communities as innovation engines

(2016) Julio Saez-Rodriguez et al.   NATURE REVIEWS GENETICS

Data Sharing

(2016) Dan L. Longo et al.   NEW ENGLAND JOURNAL OF MEDICINE

Open Data in Global Environmental Research: The Belmont Forum’s Open Data Survey

(2016) Birgit Schmidt et al.   PLoS One

Microbiome Data Science: Understanding Our Microbial Planet

(2016) Nikos C. Kyrpides et al.   TRENDS IN MICROBIOLOGY

Looking for a Signal in the Noise: Revisiting Obesity and the Microbiome

(2016) Marc A. Sze et al.   mBio

The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation

(2016) Pier Luigi Buttigieg et al.   Journal of Biomedical Semantics

Keemei: cloud-based validation of tabular bioinformatics file formats in Google Sheets

(2016) Jai Ram Rideout et al.   GigaScience

The FAIR Guiding Principles for scientific data management and stewardship

(2016) Mark D. Wilkinson et al.   Scientific Data

Machine learning: Trends, perspectives, and prospects

(2015) M. I. Jordan et al.   SCIENCE

Impacted Science: Impact Is Not Importance

(2015) Arturo Casadevall et al.   mBio

Making data count

(2015) John E. Kratz et al.   Scientific Data

Wisdom of crowds for robust gene network inference

(2012) Daniel Marbach et al.   NATURE METHODS

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

(2011) Pelin Yilmaz et al.   NATURE BIOTECHNOLOGY

Public Availability of Published Research Data in High-Impact Journals

(2011) Alawi A. Alsheikh-Ali et al.   PLoS One

The Genomic Standards Consortium

(2011) Dawn Field et al.   PLOS BIOLOGY