Transcriptional rewiring of the GcrA/CcrM bacterial epigenetic regulatory system in closely related bacteria

The CtrA regulon of Rhodobacter sphaeroides favors adaptation to a particular life style

(2020) José Hernández-Valle et al.   JOURNAL OF BACTERIOLOGY

Integrative and quantitative view of the CtrA regulatory network in a stalked budding bacterium

(2020) Oliver Leicht et al.   PLoS Genetics

Flexible comparative genomics of prokaryotic transcriptional regulatory networks

(2020) Sefa Kılıç et al.   BMC GENOMICS

An updated phylogeny of the Alphaproteobacteria reveals that the parasitic Rickettsiales and Holosporales have independent origins

(2019) Sergio A Muñoz-Gómez et al.   eLife

Analysis of Brevundimonas subvibrioides Developmental Signaling Systems Reveals Inconsistencies between Phenotypes and c-di-GMP Levels

(2019) Lauryn Sperling et al.   JOURNAL OF BACTERIOLOGY

Structural insights into the unique mechanism of transcription activation by Caulobacter crescentus GcrA

(2018) Xiaoxian Wu et al.   NUCLEIC ACIDS RESEARCH

Micropepsis pineolensis gen. nov., sp. nov., a mildly acidophilic alphaproteobacterium isolated from a poor fen, and proposal of Micropepsaceae fam. nov. within Micropepsales ord. nov.

(2017) Austin B. Harbison et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

TimeTree: A Resource for Timelines, Timetrees, and Divergence Times

(2017) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

CtrA controls cell division and outer membrane composition of the pathogenBrucella abortus

(2017) Nayla Francis et al.   MOLECULAR MICROBIOLOGY

Stalk formation of Brevundimonas and how it compares to Caulobacter crescentus

(2017) Patrick D. Curtis   PLoS One

A Bayesian inference method for the analysis of transcriptional regulatory networks in metagenomic data

(2016) Elizabeth T. Hobbs et al.   Algorithms for Molecular Biology

Iodidimonas muriae gen. nov., sp. nov., an aerobic iodide-oxidizing bacterium isolated from brine of a natural gas and iodine recovery facility, and proposals of Iodidimonadaceae fam. nov., Iodidimonadales ord. nov., Emcibacteraceae fam. nov. and Emcibacterales ord. nov.

(2016)   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Cell Cycle Constraints and Environmental Control of Local DNA Hypomethylation in α-Proteobacteria

(2016) Silvia Ardissone et al.   PLoS Genetics

Transcriptional rewiring over evolutionary timescales changes quantitative and qualitative properties of gene expression

(2016) Chiraj K Dalal et al.   eLife

Analysis of the FnrL regulon in Rhodobacter capsulatus reveals limited regulon overlap with orthologues from Rhodobacter sphaeroides and Escherichia coli

(2015) Joseph E. Kumka et al.   BMC GENOMICS

The bacterial cell cycle regulator GcrA is a σ70cofactor that drives gene expression from a subset of methylated promoters

(2015) Diane L. Haakonsen et al.   GENES & DEVELOPMENT

Cell Cycle Control by the Master Regulator CtrA in Sinorhizobium meliloti

(2015) Francesco Pini et al.   PLoS Genetics

Identification of essential alphaproteobacterial genes reveals operational variability in conserved developmental and cell cycle systems

(2014) Patrick D. Curtis et al.   MOLECULAR MICROBIOLOGY

The functions of DNA methylation by CcrM in Caulobacter crescentus: a global approach

(2014) Diego Gonzalez et al.   NUCLEIC ACIDS RESEARCH

REBASE—a database for DNA restriction and modification: enzymes, genes and genomes

(2014) Richard J. Roberts et al.   NUCLEIC ACIDS RESEARCH

Genome-Scale Analyses of Escherichia coli and Salmonella enterica AraC Reveal Noncanonical Targets and an Expanded Core Regulon

(2013) A. M. Stringer et al.   JOURNAL OF BACTERIOLOGY

DNA methylation by CcrM activates the transcription of two genes required for the division ofCaulobacter crescentus

(2013) Diego Gonzalez et al.   MOLECULAR MICROBIOLOGY

New rRNA Gene-Based Phylogenies of the Alphaproteobacteria Provide Perspective on Major Groups, Mitochondrial Ancestry and Phylogenetic Instability

(2013) Matteo P. Ferla et al.   PLoS One

Global methylation state at base-pair resolution of the Caulobacter genome throughout the cell cycle

(2013) J. B. Kozdon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DNA Binding of the Cell Cycle Transcriptional Regulator GcrA Depends on N6-Adenosine Methylation in Caulobacter crescentus and Other Alphaproteobacteria

(2013) Antonella Fioravanti et al.   PLoS Genetics

The Caulobacter crescentus phage phiCbK: genomics of a canonical phage

(2012) Jason J Gill et al.   BMC GENOMICS

Analysis of the CtrA Pathway in Magnetospirillum Reveals an Ancestral Role in Motility in Alphaproteobacteria

(2012) S. E. Greene et al.   JOURNAL OF BACTERIOLOGY

Evolutionary rewiring and reprogramming of bacterial transcription regulation

(2011) Li Wang et al.   Journal of Genetics and Genomics

The diversity and evolution of cell cycle regulation in alpha-proteobacteria: a comparative genomic analysis

(2010) Matteo Brilli et al.   BMC Systems Biology

Direct detection of DNA methylation during single-molecule, real-time sequencing

(2010) Benjamin A Flusberg et al.   NATURE METHODS

An essential transcription factor, SciP, enhances robustness of Caulobacter cell cycle regulation

(2010) M. H. Tan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolution of Transcriptional Regulatory Circuits in Bacteria

(2009) J. Christian Perez et al.   CELL