Distribution and expression of microbial rhodopsins in the Baltic Sea and adjacent waters

Diversity and Expression of Bacterial Metacaspases in an Aquatic Ecosystem

(2016) Johannes Asplund-Samuelsson et al.   Frontiers in Microbiology

Proteomic Insight into Functional Changes of Proteorhodopsin-Containing Bacterial Species Psychroflexus torquis under Different Illumination and Salinity Levels

(2015) Shi Feng et al.   JOURNAL OF PROTEOME RESEARCH

Phylogenetic Differences in Attached and Free-Living Bacterial Communities in a Temperate Coastal Lagoon during Summer, Revealed via High-Throughput 16S rRNA Gene Sequencing

(2014) Vani Mohit et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A Color-Determining Amino Acid Residue of Proteorhodopsin

(2014) Yuya Ozaki et al.   BIOCHEMISTRY

Genomes and gene expression across light and productivity gradients in eastern subtropical Pacific microbial communities

(2014) Chris L Dupont et al.   ISME Journal

Functional Tradeoffs Underpin Salinity-Driven Divergence in Microbial Community Composition

(2014) Chris L. Dupont et al.   PLoS One

Stimulation of growth by proteorhodopsin phototrophy involves regulation of central metabolic pathways in marine planktonic bacteria

(2014) J. Palovaara et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Functional characterization of flavobacteria rhodopsins reveals a unique class of light-driven chloride pump in bacteria

(2014) S. Yoshizawa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microspatial gene expression patterns in the Amazon River Plume

(2014) B. M. Satinsky et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Proteorhodopsin

(2013) Christian Bamann et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Distribution of acI-Actinorhodopsin genes in Baltic Sea salinity gradients indicates adaptation of facultative freshwater photoheterotrophs to brackish waters

(2013) Ivette Salka et al.   ENVIRONMENTAL MICROBIOLOGY

Genomics and Physiology of a Marine Flavobacterium Encoding a Proteorhodopsin and a Xanthorhodopsin-Like Protein

(2013) Thomas Riedel et al.   PLoS One

Bacterial, archaeal and viral-like rhodopsins from the Red Sea

(2013) Alon Philosof et al.   Environmental Microbiology Reports

A light-driven sodium ion pump in marine bacteria

(2013) Keiichi Inoue et al.   Nature Communications

Bacterial Dimethylsulfoniopropionate Degradation Genes in the Oligotrophic North Pacific Subtropical Gyre

(2012) Vanessa A. Varaljay et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Proteorhodopsin genes in giant viruses

(2012) Natalya Yutin et al.   Biology Direct

Diversity and functional analysis of proteorhodopsin in marine Flavobacteria

(2012) Susumu Yoshizawa et al.   ENVIRONMENTAL MICROBIOLOGY

Influence of nutrients and currents on the genomic composition of microbes across an upwelling mosaic

(2012) Lisa Zeigler Allen et al.   ISME Journal

Global abundance of microbial rhodopsins

(2012) Omri M Finkel et al.   ISME Journal

Expression patterns reveal niche diversification in a marine microbial assemblage

(2012) Scott M Gifford et al.   ISME Journal

Evolution of Photosynthesis

(2011) Martin F. Hohmann-Marriott et al.   Annual Review of Plant Biology

Metagenomic Insights into the Evolution, Function, and Complexity of the Planktonic Microbial Community of Lake Lanier, a Temperate Freshwater Ecosystem

(2011) Seungdae Oh et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Identification and removal of ribosomal RNA sequences from metatranscriptomes

(2011) Robert Schmieder et al.   BIOINFORMATICS

Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea

(2011) Daniel PR Herlemann et al.   ISME Journal

Energy Starved Candidatus Pelagibacter Ubique Substitutes Light-Mediated ATP Production for Endogenous Carbon Respiration

(2011) Laura Steindler et al.   PLoS One

Constitutive Expression of the Proteorhodopsin Gene by a Flavobacterium Strain Representative of the Proteorhodopsin-Producing Microbial Community in the North Sea

(2010) T. Riedel et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Integrated metatranscriptomic and metagenomic analyses of stratified microbial assemblages in the open ocean

(2010) Yanmei Shi et al.   ISME Journal

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Proteorhodopsin Phototrophy Promotes Survival of Marine Bacteria during Starvation

(2010) Laura Gómez-Consarnau et al.   PLOS BIOLOGY

The Light-Driven Proton Pump Proteorhodopsin Enhances Bacterial Survival during Tough Times

(2010) Edward F. DeLong et al.   PLOS BIOLOGY

Comparative day/night metatranscriptomic analysis of microbial communities in the North Pacific subtropical gyre

(2009) Rachel S. Poretsky et al.   ENVIRONMENTAL MICROBIOLOGY

Actinorhodopsin genes discovered in diverse freshwater habitats and among cultivated freshwater Actinobacteria

(2009) Adrian K Sharma et al.   ISME Journal

Infrequent Transitions between Saline and Fresh Waters in One of the Most Abundant Microbial Lineages (SAR11)

(2009) R. Logares et al.   MOLECULAR BIOLOGY AND EVOLUTION

The genomic basis of trophic strategy in marine bacteria

(2009) F. M. Lauro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic Diversity and Abundance of Flavobacterial Proteorhodopsin in China Seas

(2008) M. Zhao et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Widespread distribution of proteorhodopsins in freshwater and brackish ecosystems

(2008) Nof Atamna-Ismaeel et al.   ISME Journal

Microbial community gene expression in ocean surface waters

(2008) J. Frias-Lopez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA