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Title
Robust inference of kinase activity using functional networks
Authors
Keywords
-
Journal
Nature Communications
Volume 12, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2021-02-21
DOI
10.1038/s41467-021-21211-6
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- (2020) Maruan Hijazi et al. NATURE BIOTECHNOLOGY
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- (2019) Elise J. Needham et al. Science Signaling
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- (2019) Marzieh Ayati et al. PLoS Computational Biology
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- (2019) Osama Ali Arshad et al. MOLECULAR & CELLULAR PROTEOMICS
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- (2018) Joerg Neddens et al. Acta Neuropathologica Communications
- A curated resource for phosphosite-specific signature analysis
- (2018) Karsten Krug et al. MOLECULAR & CELLULAR PROTEOMICS
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- (2017) Lenore Cowen et al. NATURE REVIEWS GENETICS
- Phosphoproteomics Profiling of Nonsmall Cell Lung Cancer Cells Treated with a Novel Phosphatase Activator
- (2017) Danica D. Wiredja et al. PROTEOMICS
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- (2017) Anna Cichonska et al. PLoS Computational Biology
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- (2016) Justin M. Drake et al. CELL
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- (2015) Marcel Mischnik et al. BIOINFORMATICS
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- (2014) P. Neviani et al. CLINICAL CANCER RESEARCH
- Ubiquitin is phosphorylated by PINK1 to activate parkin
- (2014) Fumika Koyano et al. NATURE
- KinomeXplorer: an integrated platform for kinome biology studies
- (2014) Heiko Horn et al. NATURE METHODS
- PhosphoSitePlus, 2014: mutations, PTMs and recalibrations
- (2014) Peter V. Hornbeck et al. NUCLEIC ACIDS RESEARCH
- STRING v10: protein–protein interaction networks, integrated over the tree of life
- (2014) Damian Szklarczyk et al. NUCLEIC ACIDS RESEARCH
- PSEA: Kinase-specific prediction and analysis of human phosphorylation substrates
- (2014) Sheng-Bao Suo et al. Scientific Reports
- Integrating phosphoproteomics in systems biology
- (2014) Yu Liu et al. Computational and Structural Biotechnology Journal
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- (2013) Danilo Perrotti et al. LANCET ONCOLOGY
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- (2013) Noah Dephoure et al. MOLECULAR BIOLOGY OF THE CELL
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- (2012) K. D. Copps et al. DIABETOLOGIA
- PTMcode: a database of known and predicted functional associations between post-translational modifications in proteins
- (2012) Pablo Minguez et al. NUCLEIC ACIDS RESEARCH
- Oncogene-specific activation of tyrosine kinase networks during prostate cancer progression
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- Dysregulated phosphorylation of Ca2+/calmodulin-dependent protein kinase II-α in the hippocampus of subjects with mild cognitive impairment and Alzheimer’s disease
- (2011) Lindsay C. Reese et al. JOURNAL OF NEUROCHEMISTRY
- Erlotinib versus chemotherapy as first-line treatment for patients with advanced EGFR mutation-positive non-small-cell lung cancer (OPTIMAL, CTONG-0802): a multicentre, open-label, randomised, phase 3 study
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- (2010) Jang Hyun Choi et al. NATURE
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- (2010) James E. Butrynski et al. NEW ENGLAND JOURNAL OF MEDICINE
- eQED: an efficient method for interpreting eQTL associations using protein networks
- (2008) Silpa Suthram et al. Molecular Systems Biology
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- (2007) Puneet Puri et al. GASTROENTEROLOGY
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