Splicing-associated chromatin signatures: a combinatorial and position-dependent role for histone marks in splicing definition
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Title
Splicing-associated chromatin signatures: a combinatorial and position-dependent role for histone marks in splicing definition
Authors
Keywords
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Journal
Nature Communications
Volume 12, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2021-01-29
DOI
10.1038/s41467-021-20979-x
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Note: Only part of the references are listed.- Integrative analysis reveals functional and regulatory roles of H3K79me2 in mediating alternative splicing
- (2018) Tianbao Li et al. Genome Medicine
- The chromatin remodeler ZmCHB101 impacts alternative splicing contexts in response to osmotic stress
- (2018) Xiaoming Yu et al. PLANT CELL REPORTS
- An atlas of alternative splicing profiles and functional associations reveals new regulatory programs and genes that simultaneously express multiple major isoforms
- (2017) Javier Tapial et al. GENOME RESEARCH
- Multilayered Control of Alternative Splicing Regulatory Networks by Transcription Factors
- (2017) Hong Han et al. MOLECULAR CELL
- Mammalian NET-seq analysis defines nascent RNA profiles and associated RNA processing genome-wide
- (2016) Takayuki Nojima et al. Nature Protocols
- The alternative splicing program of differentiated smooth muscle cells involves concerted non-productive splicing of post-transcriptional regulators
- (2016) Miriam Llorian et al. NUCLEIC ACIDS RESEARCH
- deepTools2: a next generation web server for deep-sequencing data analysis
- (2016) Fidel Ramírez et al. NUCLEIC ACIDS RESEARCH
- Enrichr: a comprehensive gene set enrichment analysis web server 2016 update
- (2016) Maxim V. Kuleshov et al. NUCLEIC ACIDS RESEARCH
- A chromatin code for alternative splicing involving a putative association between CTCF and HP1α proteins
- (2015) Eneritz Agirre et al. BMC BIOLOGY
- Learning the Sequence Determinants of Alternative Splicing from Millions of Random Sequences
- (2015) Alexander B. Rosenberg et al. CELL
- Nuclear matrix protein Matrin3 regulates alternative splicing and forms overlapping regulatory networks with PTB
- (2015) M. B. Coelho et al. EMBO JOURNAL
- A lncRNA regulates alternative splicing via establishment of a splicing-specific chromatin signature
- (2015) Inma Gonzalez et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Relationship between nucleosome positioning and progesterone-induced alternative splicing in breast cancer cells
- (2015) Camilla Iannone et al. RNA
- Splicing predictions reliably classify different types of alternative splicing
- (2015) Anke Busch et al. RNA
- A lncRNA regulates alternative splicing via establishment of a splicing-specific chromatin signature
- (2015) Inma Gonzalez et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- SF3B1 Association with Chromatin Determines Splicing Outcomes
- (2015) Nir Kfir et al. Cell Reports
- HP1 Is Involved in Regulating the Global Impact of DNA Methylation on Alternative Splicing
- (2015) Ahuvi Yearim et al. Cell Reports
- hnRNP K Coordinates Transcriptional Silencing by SETDB1 in Embryonic Stem Cells
- (2015) Peter J. Thompson et al. PLoS Genetics
- Feature Selection with theBorutaPackage
- (2015) Miron B. Kursa et al. Journal of Statistical Software
- Pre-mRNA splicing is facilitated by an optimal RNA polymerase II elongation rate
- (2014) Nova Fong et al. GENES & DEVELOPMENT
- The adipogenic transcriptional cofactor ZNF638 interacts with splicing regulators and influences alternative splicing
- (2014) Chen Du et al. JOURNAL OF LIPID RESEARCH
- Context-dependent control of alternative splicing by RNA-binding proteins
- (2014) Xiang-Dong Fu et al. NATURE REVIEWS GENETICS
- Histone Modifications Are Associated with Transcript Isoform Diversity in Normal and Cancer Cells
- (2014) Ondrej Podlaha et al. PLoS Computational Biology
- Regulation of Arabidopsis Flowering by the Histone Mark Readers MRG1/2 via Interaction with CONSTANS to Modulate FT Expression
- (2014) Zhongyuan Bu et al. PLoS Genetics
- Chronic cocaine-regulated epigenomic changes in mouse nucleus accumbens
- (2014) Jian Feng et al. GENOME BIOLOGY
- Intragenic DNA methylation modulates alternative splicing by recruiting MeCP2 to promote exon recognition
- (2013) Alika K Maunakea et al. CELL RESEARCH
- A compendium of RNA-binding motifs for decoding gene regulation
- (2013) Debashish Ray et al. NATURE
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- Epigenetic features are significantly associated with alternative splicing
- (2012) Yuanpeng Zhou et al. BMC GENOMICS
- Alternative splicing: decoding an expansive regulatory layer
- (2012) Manuel Irimia et al. CURRENT OPINION IN CELL BIOLOGY
- Combinations of Histone Modifications Mark Exon Inclusion Levels
- (2012) Stefan Enroth et al. PLoS One
- Differential GC Content between Exons and Introns Establishes Distinct Strategies of Splice-Site Recognition
- (2012) Maayan Amit et al. Cell Reports
- Psip1/Ledgf p52 Binds Methylated Histone H3K36 and Splicing Factors and Contributes to the Regulation of Alternative Splicing
- (2012) Madapura M. Pradeepa et al. PLoS Genetics
- Subsampling methods for genomic inference
- (2011) Peter J. Bickel et al. Annals of Applied Statistics
- Pyicos: a versatile toolkit for the analysis of high-throughput sequencing data
- (2011) Sonja Althammer et al. BIOINFORMATICS
- Epigenetics in Alternative Pre-mRNA Splicing
- (2011) Reini F. Luco et al. CELL
- More than a splicing code: integrating the role of RNA, chromatin and non-coding RNA in alternative splicing regulation
- (2011) Reini F Luco et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- Regulation of Adipocyte Differentiation by the Zinc Finger Protein ZNF638
- (2011) Sunitha Meruvu et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing
- (2011) Sanjeev Shukla et al. NATURE
- Histone H3 lysine 9 trimethylation and HP1γ favor inclusion of alternative exons
- (2011) Violaine Saint-André et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Deciphering the splicing code
- (2010) Yoseph Barash et al. NATURE
- Relationship between nucleosome positioning and DNA methylation
- (2010) Ramakrishna K. Chodavarapu et al. NATURE
- Regulation of Alternative Splicing by Histone Modifications
- (2010) R. F. Luco et al. SCIENCE
- The Spliceosome: Design Principles of a Dynamic RNP Machine
- (2009) Markus C. Wahl et al. CELL
- Nucleosomes are well positioned in exons and carry characteristic histone modifications
- (2009) R. Andersson et al. GENOME RESEARCH
- Heterogeneous Nuclear Ribonucleoprotein L Is a Subunit of Human KMT3a/Set2 Complex Required for H3 Lys-36 Trimethylation Activityin Vivo
- (2009) Wen Yuan et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Biased Chromatin Signatures around Polyadenylation Sites and Exons
- (2009) Noah Spies et al. MOLECULAR CELL
- Differential chromatin marking of introns and expressed exons by H3K36me3
- (2009) Paulina Kolasinska-Zwierz et al. NATURE GENETICS
- Nucleosome positioning as a determinant of exon recognition
- (2009) Hagen Tilgner et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Chromatin organization marks exon-intron structure
- (2009) Schraga Schwartz et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Neuronal cell depolarization induces intragenic chromatin modifications affecting NCAM alternative splicing
- (2009) I. E. Schor et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Acetylation by the Transcriptional Coactivator Gcn5 Plays a Novel Role in Co-Transcriptional Spliceosome Assembly
- (2009) Felizza Q. Gunderson et al. PLoS Genetics
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Alternative isoform regulation in human tissue transcriptomes
- (2008) Eric T. Wang et al. NATURE
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