Responses of cyanobacterial aggregate microbial communities to algal blooms

Seasonal succession and spatial distribution of bacterial community structure in a eutrophic freshwater Lake, Lake Taihu

(2019) Congmin Zhu et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Alternate succession of aggregate-forming cyanobacterial genera correlated with their attached bacteria by co-pathways

(2019) Cong-Min Zhu et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Function and functional redundancy in microbial systems

(2018) Stilianos Louca et al.   Nature Ecology & Evolution

Microbial profiles of a drinking water resource based on different 16S rRNA V regions during a heavy cyanobacterial bloom in Lake Taihu, China

(2017) Junyi Zhang et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

(2017) Robert M Bowers et al.   NATURE BIOTECHNOLOGY

Pyrosequencing analysis of free-living and attached bacterial communities in Meiliang Bay, Lake Taihu, a large eutrophic shallow lake in China

(2015) Xiangming Tang et al.   CANADIAN JOURNAL OF MICROBIOLOGY

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

N2-fixation, ammonium release and N-transfer to the microbial and classical food web within a plankton community

(2015) Birgit Adam et al.   ISME Journal

Multi-omics of permafrost, active layer and thermokarst bog soil microbiomes

(2015) Jenni Hultman et al.   NATURE

STAMP: statistical analysis of taxonomic and functional profiles

(2014) Donovan H. Parks et al.   BIOINFORMATICS

Direct exchange of vitamin B12 is demonstrated by modelling the growth dynamics of algal–bacterial cocultures

(2014) Matthew AA Grant et al.   ISME Journal

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Binning metagenomic contigs by coverage and composition

(2014) Johannes Alneberg et al.   NATURE METHODS

Algal blooms: Noteworthy nitrogen

(2014) H. W. Paerl et al.   SCIENCE

Genome sequence-based species delimitation with confidence intervals and improved distance functions

(2013) Jan P Meier-Kolthoff et al.   BMC BIOINFORMATICS

Expression Analysis on Archival Material Revisited

(2013) Christophe Deben et al.   DIAGNOSTIC MOLECULAR PATHOLOGY

Analysis of the Attached Microbial Community on Mucilaginous Cyanobacterial Aggregates in the Eutrophic Lake Taihu Reveals the Importance of Planctomycetes

(2013) Hai-Yuan Cai et al.   MICROBIAL ECOLOGY

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

CRISPR-Cas Systems in the Cyanobacterium Synechocystis sp. PCC6803 Exhibit Distinct Processing Pathways Involving at Least Two Cas6 and a Cmr2 Protein

(2013) Ingeborg Scholz et al.   PLoS One

Gene and translation initiation site prediction in metagenomic sequences

(2012) Doug Hyatt et al.   BIOINFORMATICS

The importance of bacteria in promoting algal growth in eutrophic lakes with limited available phosphorus

(2012) Guiying Zhao et al.   ECOLOGICAL ENGINEERING

Temporal variability of cyanobacterial populations in the water and sediment samples of Lake Taihu as determined by DGGE and real-time PCR

(2011) Wenjin Ye et al.   HARMFUL ALGAE

Community Structure of Bacteria Associated withMicrocystisColonies from Cyanobacterial Blooms

(2011) Limei Shia et al.   JOURNAL OF FRESHWATER ECOLOGY

Nitrogen and phosphorus inputs control phytoplankton growth in eutrophic Lake Taihu, China

(2011) Hai Xu et al.   LIMNOLOGY AND OCEANOGRAPHY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Phytoplankton community succession shaping bacterioplankton community composition in Lake Taihu, China

(2011) Yuan Niu et al.   WATER RESEARCH

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Enslavement in the Water Body by Toxic Aphanizomenon ovalisporum, Inducing Alkaline Phosphatase in Phytoplanktons

(2010) Yehonathan Bar-Yosef et al.   CURRENT BIOLOGY

The complete genome sequence of the algal symbiont Dinoroseobacter shibae: a hitchhiker's guide to life in the sea

(2009) Irene Wagner-Döbler et al.   ISME Journal

Seasonal variation of Microcystis in Lake Taihu and its relationships with environmental factors

(2009) Xiao TAN et al.   JOURNAL OF ENVIRONMENTAL SCIENCES

The genomic basis of trophic strategy in marine bacteria

(2009) F. M. Lauro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Decomposition and phosphorus release from four different size fractions of Microcystis spp. taken from Lake Taihu, China

(2008) Yuanyuan WANG et al.   JOURNAL OF ENVIRONMENTAL SCIENCES

CLIMATE: Blooms Like It Hot

(2008) H. W. Paerl et al.   SCIENCE

Using NDVI from MODIS to Monitor Duckweed Bloom in Lake Maracaibo, Venezuela

(2008) Lawrence M. Kiage et al.   WATER RESOURCES MANAGEMENT