Soil fungal diversity and functionality are driven by plant species used in phytoremediation

Mycorrhizal types differ in ecophysiology and alter plant nutrition and soil processes

(2019) Leho Tedersoo et al.   BIOLOGICAL REVIEWS

Distinct Biogeography of Different Fungal Guilds and Their Associations With Plant Species Richness in Forest Ecosystems

(2019) Pandeng Wang et al.   Frontiers in Ecology and Evolution

Challenges and Opportunities for Soil Biodiversity in the Anthropocene

(2019) Stefan Geisen et al.   CURRENT BIOLOGY

Evaluation of amendment addition and tree planting as measures to remediate contaminated soils: The Guadiamar case study (SW Spain)

(2018) P. Madejón et al.   CATENA

Contrasting effects of ectomycorrhizal fungi on early and late stage decomposition in a boreal forest

(2018) Erica Sterkenburg et al.   ISME Journal

Predicting the structure of soil communities from plant community taxonomy, phylogeny, and traits

(2018) Jonathan W. Leff et al.   ISME Journal

Soil-plant relationships and contamination by trace elements: A review of twenty years of experimentation and monitoring after the Aznalcóllar (SW Spain) mine accident

(2018) Paula Madejón et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Functional diversity of ectomycorrhizal fungal communities is reduced by trace element contamination

(2018) Álvaro López-García et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil quality – A critical review

(2018) Else K. Bünemann et al.   SOIL BIOLOGY & BIOCHEMISTRY

Environment and host as large-scale controls of ectomycorrhizal fungi

(2018) Sietse van der Linde et al.   NATURE

Fungal Communities Along a Small-Scale Elevational Gradient in an Alpine Tundra Are Determined by Soil Carbon Nitrogen Ratios

(2018) Yingying Ni et al.   Frontiers in Microbiology

Mycobiome diversity: high-throughput sequencing and identification of fungi

(2018) R. Henrik Nilsson et al.   NATURE REVIEWS MICROBIOLOGY

Ectomycorrhizal Fungal Communities and Their Functional Traits Mediate Plant–Soil Interactions in Trace Element Contaminated Soils

(2018) Marta Gil-Martínez et al.   Frontiers in Plant Science

Responses of soil fungal and archaeal communities to environmental factors in an ongoing antimony mine area

(2018) Ningning Wang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Residual pollution and vegetation distribution in amended soils 20 years after a pyrite mine tailings spill (Aznalcóllar, Spain)

(2018) M. García-Carmona et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Tree species identity and diversity drive fungal richness and community composition along an elevational gradient in a Mediterranean ecosystem

(2017) Alessandro Saitta et al.   MYCORRHIZA

Algorithm for post-clustering curation of DNA amplicon data yields reliable biodiversity estimates

(2017) Tobias Guldberg Frøslev et al.   Nature Communications

Characterization of Bacterial and Fungal Community Dynamics by High-Throughput Sequencing (HTS) Metabarcoding during Flax Dew-Retting

(2017) Christophe Djemiel et al.   Frontiers in Microbiology

Dominant Tree Species and Soil Type Affect the Fungal Community Structure in a Boreal Peatland Forest

(2016) Hui Sun et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

(2016) Nhu H. Nguyen et al.   Fungal Ecology

River banks and channels as hotspots of soil pollution after large-scale remediation of a river basin

(2016) M.T. Domínguez et al.   GEODERMA

Organic amendments increase phylogenetic diversity of arbuscular mycorrhizal fungi in acid soil contaminated by trace elements

(2016) María del Mar Montiel-Rozas et al.   MYCORRHIZA

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Relationships between soil fungal and woody plant assemblages differ between ridge and valley habitats in a subtropical mountain forest

(2016) Cheng Gao et al.   NEW PHYTOLOGIST

Environmental metabarcoding reveals contrasting microbial communities at two poplar phytomanagement sites

(2016) Julie Foulon et al.   SCIENCE OF THE TOTAL ENVIRONMENT

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Compartmentalized and contrasted response of ectomycorrhizal and soil fungal communities of Scots pine forests along elevation gradients in France and Spain

(2015) Ana Rincón et al.   ENVIRONMENTAL MICROBIOLOGY

Plant-associated fungal communities in the light of meta’omics

(2015) Derek Peršoh   FUNGAL DIVERSITY

Fitting Linear Mixed-Effects Models Usinglme4

(2015) Douglas Bates et al.   Journal of Statistical Software

Revisiting the ‘Gadgil effect’: do interguild fungal interactions control carbon cycling in forest soils?

(2015) Christopher W. Fernandez et al.   NEW PHYTOLOGIST

Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession

(2015) Francisco Dini-Andreote et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global assessment of arbuscular mycorrhizal fungus diversity reveals very low endemism

(2015) J. Davison et al.   SCIENCE

Diversity and complexity of microbial communities from a chlor-alkali tailings dump

(2015) Cyril Zappelini et al.   SOIL BIOLOGY & BIOCHEMISTRY

Composition of fungal and bacterial communities in forest litter and soil is largely determined by dominant trees

(2015) Michaela Urbanová et al.   SOIL BIOLOGY & BIOCHEMISTRY

Arbuscular mycorrhizal fungi in phytoremediation of contaminated areas by trace elements: mechanisms and major benefits of their applications

(2015) Lucélia Cabral et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Extinction risk of soil biota

(2015) Stavros D. Veresoglou et al.   Nature Communications

Mycorrhizas in changing ecosystems,

(2014) Ian A. Dickie et al.   Botany

Impact of metal pollution on fungal diversity and community structures

(2014) Michiel Op De Beeck et al.   ENVIRONMENTAL MICROBIOLOGY

Ectomycorrhizal fungal communities associated with Masson pine (Pinus massoniana) and white oak (Quercus fabri) in a manganese mining region in Hunan Province, China

(2014) Jian Huang et al.   Fungal Ecology

Links between plant and fungal communities across a deforestation chronosequence in the Amazon rainforest

(2014) Rebecca C Mueller et al.   ISME Journal

Does host plant richness explain diversity of ectomycorrhizal fungi? Re-evaluation of Gaoet al. (2013) data sets reveals sampling effects

(2014) Leho Tedersoo et al.   MOLECULAR ECOLOGY

Fodinomyces uranophilus gen. nov. sp. nov. and Coniochaeta fodinicola sp. nov., two uranium mine-inhabiting Ascomycota fungi from northern Australia

(2014) Xabier Vázquez-Campos et al.   MYCOLOGIA

Nutrient Addition Dramatically Accelerates Microbial Community Succession

(2014) Joseph E. Knelman et al.   PLoS One

Global diversity and geography of soil fungi

(2014) L. Tedersoo et al.   SCIENCE

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

(2014) Paul J. McMurdie et al.   PLoS Computational Biology

From Dandruff to Deep-Sea Vents: Malassezia-like Fungi Are Ecologically Hyper-diverse

(2014) Anthony Amend   PLoS Pathogens

An estimate of potential threats levels to soil biodiversity in EU

(2013) Ciro Gardi et al.   GLOBAL CHANGE BIOLOGY

Rhizosphere microbiome assemblage is affected by plant development

(2013) Jacqueline M Chaparro et al.   ISME Journal

Strong coupling of plant and fungal community structure across western Amazonian rainforests

(2013) Kabir G Peay et al.   ISME Journal

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

Meta-analysis of deep-sequenced fungal communities indicates limited taxon sharing between studies and the presence of biogeographic patterns

(2013) Anjuli Meiser et al.   NEW PHYTOLOGIST

Mycorrhizas and mycorrhizal fungal communities throughout ecosystem development

(2013) Ian A. Dickie et al.   PLANT AND SOIL

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Investigating the Impact of Storage Conditions on Microbial Community Composition in Soil Samples

(2013) Benjamin E. R. Rubin et al.   PLoS One

A Multifactor Analysis of Fungal and Bacterial Community Structure in the Root Microbiome of Mature Populus deltoides Trees

(2013) Migun Shakya et al.   PLoS One

Abiotic drivers and plant traits explain landscape-scale patterns in soil microbial communities

(2012) Franciska T. de Vries et al.   ECOLOGY LETTERS

Acidiella bohemica gen. et sp. nov. and Acidomyces spp. (Teratosphaeriaceae), the indigenous inhabitants of extremely acidic soils in Europe

(2012) Martina Hujslová et al.   FUNGAL DIVERSITY

Fungal community on decomposing leaf litter undergoes rapid successional changes

(2012) Jana Voříšková et al.   ISME Journal

Natural remediation of an unremediated soil twelve years after a mine accident: Trace element mobility and plant composition

(2012) Pilar Burgos et al.   JOURNAL OF ENVIRONMENTAL MANAGEMENT

Towards global patterns in the diversity and community structure of ectomycorrhizal fungi

(2012) LEHO TEDERSOO et al.   MOLECULAR ECOLOGY

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi

(2012) C. L. Schoch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Independent roles of ectomycorrhizal and saprotrophic communities in soil organic matter decomposition

(2012) Jennifer M. Talbot et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil Microbial Community Successional Patterns during Forest Ecosystem Restoration

(2011) Natasha C. Banning et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases

(2010) Eva Bellemain et al.   BMC MICROBIOLOGY

Associations between species and groups of sites: indices and statistical inference

(2009) Miquel De Cáceres et al.   ECOLOGY

Evaluation of pastures for horses grazing on soils polluted by trace elements

(2009) P. Madejón et al.   ECOTOXICOLOGY

Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere

(2009) Gabriele Berg et al.   FEMS MICROBIOLOGY ECOLOGY

Ectomycorrhizal lifestyle in fungi: global diversity, distribution, and evolution of phylogenetic lineages

(2009) Leho Tedersoo et al.   MYCORRHIZA

454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity

(2009) M. Buée et al.   NEW PHYTOLOGIST

Nutritional Status of Mediterranean Trees Growing in a Contaminated and Remediated Area

(2009) María T. Domínguez et al.   WATER AIR AND SOIL POLLUTION

The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems

(2008) Marcel G. A. van der Heijden et al.   ECOLOGY LETTERS

Application of species richness estimators for the assessment of fungal diversity

(2008) Martin Unterseher et al.   FEMS MICROBIOLOGY LETTERS

Trace element accumulation in woody plants of the Guadiamar Valley, SW Spain: A large-scale phytomanagement case study

(2007) María T. Domínguez et al.   ENVIRONMENTAL POLLUTION