Compartmentalized and contrasted response of ectomycorrhizal and soil fungal communities of Scots pine forests along elevation gradients in France and Spain

The unseen world: environmental microbial sequencing and identification methods for ecologists

(2014) Naupaka Zimmerman et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Habitat preferences, distribution, and temporal persistence of a novel fungal taxon in Alaskan boreal forest soils

(2014) Daniel J. Glass et al.   Fungal Ecology

Fungi, ecosystems and global change

(2014) Linda T.A. van Diepen et al.   Fungal Ecology

The mid-domain effect in ectomycorrhizal fungi: range overlap along an elevation gradient on Mount Fuji, Japan

(2014) Yumiko Miyamoto et al.   ISME Journal

Environmental drivers of ectomycorrhizal communities in Europe's temperate oak forests

(2014) Laura M. Suz et al.   MOLECULAR ECOLOGY

Large-scale fungal diversity assessment in the Andean Yungas forests reveals strong community turnover among forest types along an altitudinal gradient

(2014) József Geml et al.   MOLECULAR ECOLOGY

Mycorrhiza-mediated competition between plants and decomposers drives soil carbon storage

(2014) Colin Averill et al.   NATURE

Deep thoughts on ectomycorrhizal fungal communities

(2014) Ian A. Dickie et al.   NEW PHYTOLOGIST

Spore dispersal of basidiomycete fungi at the landscape scale is driven by stochastic and deterministic processes and generates variability in plant-fungal interactions

(2014) Kabir G. Peay et al.   NEW PHYTOLOGIST

Parsing ecological signal from noise in next generation amplicon sequencing

(2014) Nhu H. Nguyen et al.   NEW PHYTOLOGIST

Leaf and Root-Associated Fungal Assemblages Do Not Follow Similar Elevational Diversity Patterns

(2014) Aurore Coince et al.   PLoS One

Global diversity and geography of soil fungi

(2014) L. Tedersoo et al.   SCIENCE

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

(2014) Paul J. McMurdie et al.   PLoS Computational Biology

A first comprehensive census of fungi in soil reveals both hyperdiversity and fine-scale niche partitioning

(2013) D. Lee Taylor et al.   ECOLOGICAL MONOGRAPHS

Below-ground fine-scale distribution and soil versus fine root detection of fungal and soil oomycete communities in a French beech forest

(2013) Aurore Coince et al.   Fungal Ecology

Predicting species-specific responses of fungi to climatic variation using historical records

(2013) Jeffrey M. Diez et al.   GLOBAL CHANGE BIOLOGY

Regional scale gradients of climate and nitrogen deposition drive variation in ectomycorrhizal fungal communities associated with native Scots pine

(2013) S. Jarvis et al.   GLOBAL CHANGE BIOLOGY

Investigating the long-term legacy of drought and warming on the soil microbial community across five European shrubland ecosystems

(2013) Johannes Rousk et al.   GLOBAL CHANGE BIOLOGY

Loss in microbial diversity affects nitrogen cycling in soil

(2013) Laurent Philippot et al.   ISME Journal

The distance decay of similarity in communities of ectomycorrhizal fungi in different ecosystems and scales

(2013) Mohammad Bahram et al.   JOURNAL OF ECOLOGY

Host plant genus-level diversity is the best predictor of ectomycorrhizal fungal diversity in a Chinese subtropical forest

(2013) Cheng Gao et al.   MOLECULAR ECOLOGY

Fungal systematics: is a new age of enlightenment at hand?

(2013) David S. Hibbett et al.   NATURE REVIEWS MICROBIOLOGY

Still scratching the surface: how much of the ‘black box’ of soil ectomycorrhizal communities remains in the dark?

(2013) Brian J. Pickles et al.   NEW PHYTOLOGIST

Fine-scale diversity and distribution of ectomycorrhizal fungal mycelium in a Scots pine forest

(2013) Ian C. Anderson et al.   NEW PHYTOLOGIST

Modulating effects of ontogeny on the outcome of plant-plant interactions along stress gradients

(2013) Cristina Armas et al.   NEW PHYTOLOGIST

Determining place and process: functional traits of ectomycorrhizal fungi that affect both community structure and ecosystem function

(2013) Roger T. Koide et al.   NEW PHYTOLOGIST

Meta-analysis of deep-sequenced fungal communities indicates limited taxon sharing between studies and the presence of biogeographic patterns

(2013) Anjuli Meiser et al.   NEW PHYTOLOGIST

Roots and Associated Fungi Drive Long-Term Carbon Sequestration in Boreal Forest

(2013) K. E. Clemmensen et al.   SCIENCE

Illumina metabarcoding of a soil fungal community

(2013) Philipp-André Schmidt et al.   SOIL BIOLOGY & BIOCHEMISTRY

Community composition of root-associated fungi in aQuercus-dominated temperate forest: “codominance” of mycorrhizal and root-endophytic fungi

(2013) Hirokazu Toju et al.   Ecology and Evolution

Lineages of ectomycorrhizal fungi revisited: Foraging strategies and novel lineages revealed by sequences from belowground

(2013) Leho Tedersoo et al.   Fungal Biology Reviews

Global species numbers of fungi: are tropical studies and molecular approaches contributing to a more robust estimate?

(2012) D. L. Hawksworth   BIODIVERSITY AND CONSERVATION

Towards global patterns in the diversity and community structure of ectomycorrhizal fungi

(2012) LEHO TEDERSOO et al.   MOLECULAR ECOLOGY

Amplicon-pyrosequencing-based detection of compositional shifts in bryophyte-associated fungal communities along an elevation gradient

(2012) Marie L. Davey et al.   MOLECULAR ECOLOGY

The importance of individuals: intraspecific diversity of mycorrhizal plants and fungi in ecosystems

(2012) David Johnson et al.   NEW PHYTOLOGIST

Rapid responses of soil microorganisms improve plant fitness in novel environments

(2012) J. A. Lau et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sequencing our way towards understanding global eukaryotic biodiversity

(2012) Holly M. Bik et al.   TRENDS IN ECOLOGY & EVOLUTION

Conservation of ectomycorrhizal fungi: exploring the linkages between functional and taxonomic responses to anthropogenic N deposition

(2011) E.A. Lilleskov et al.   Fungal Ecology

Ectomycorrhizas and climate change

(2011) Brian J. Pickles et al.   Fungal Ecology

Projecting the future distribution of European potential natural vegetation zones with a generalized, tree species-based dynamic vegetation model

(2011) Thomas Hickler et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Discovery of novel intermediate forms redefines the fungal tree of life

(2011) Meredith D. M. Jones et al.   NATURE

Regional and local patterns of ectomycorrhizal fungal diversity and community structure along an altitudinal gradient in the Hyrcanian forests of northern Iran

(2011) Mohammad Bahram et al.   NEW PHYTOLOGIST

Disentangling the Drivers of   Diversity Along Latitudinal and Elevational Gradients

(2011) N. J. B. Kraft et al.   SCIENCE

The Plant Cell Wall-Decomposing Machinery Underlies the Functional Diversity of Forest Fungi

(2011) D. C. Eastwood et al.   SCIENCE

Archaeorhizomycetes: Unearthing an Ancient Class of Ubiquitous Soil Fungi

(2011) A. Rosling et al.   SCIENCE

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Nitrogen availability is a primary determinant of conifer mycorrhizas across complex environmental gradients

(2010) Filipa Cox et al.   ECOLOGY LETTERS

An open source software package for automated extraction of ITS1 and ITS2 from fungal ITS sequences for use in high-throughput community assays and molecular ecology

(2010) R. Henrik Nilsson et al.   Fungal Ecology

Long-term experimental manipulation of climate alters the ectomycorrhizal community of Betula nana in Arctic tundra

(2010) J. R. DESLIPPE et al.   GLOBAL CHANGE BIOLOGY

Soil bacterial and fungal communities across a pH gradient in an arable soil

(2010) Johannes Rousk et al.   ISME Journal

Species abundance distributions and richness estimations in fungal metagenomics - lessons learned from community ecology

(2010) MARTIN UNTERSEHER et al.   MOLECULAR ECOLOGY

Massively parallel 454-sequencing of fungal communities inQuercusspp. ectomycorrhizas indicates seasonal dynamics in urban and rural sites

(2010) ARI JUMPPONEN et al.   MOLECULAR ECOLOGY

Quantifying microbial communities with 454 pyrosequencing: does read abundance count?

(2010) ANTHONY S. AMEND et al.   MOLECULAR ECOLOGY

Spatial and temporal ecology of Scots pine ectomycorrhizas

(2010) Brian J. Pickles et al.   NEW PHYTOLOGIST

Fungal growth on a common wood substrate across a tropical elevation gradient: Temperature sensitivity, community composition, and potential for above-ground decomposition

(2010) Courtney L. Meier et al.   SOIL BIOLOGY & BIOCHEMISTRY

Is forest diversity driving ecosystem function and service?

(2010) Karin Nadrowski et al.   Current Opinion in Environmental Sustainability

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Contrasting Soil pH Effects on Fungal and Bacterial Growth Suggest Functional Redundancy in Carbon Mineralization

(2009) J. Rousk et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Post-Little Ice Age tree line rise and climate warming in the Swedish Scandes: a landscape ecological perspective

(2009) Leif Kullman et al.   JOURNAL OF ECOLOGY

Are true multihost fungi the exception or the rule? Dominant ectomycorrhizal fungi on Pinus sabiniana differ from those on co-occurring Quercus species

(2009) Matthew E. Smith et al.   NEW PHYTOLOGIST

454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity

(2009) M. Buée et al.   NEW PHYTOLOGIST

The Genome Sequencer FLX™ System—Longer reads, more applications, straight forward bioinformatics and more complete data sets

(2008) Marcus Droege et al.   JOURNAL OF BIOTECHNOLOGY