Genomic, epigenomic, and biophysical cues controlling the emergence of the lung alveolus

Epithelial Vegfa Specifies a Distinct Endothelial Population in the Mouse Lung

(2020) Lisandra Vila Ellis et al.   DEVELOPMENTAL CELL

Defining the role of pulmonary endothelial cell heterogeneity in the response to acute lung injury

(2020) Terren K Niethamer et al.   eLife

Smooth Muscle Differentiation Is Essential for Airway Size, Tracheal Cartilage Segmentation, but Dispensable for Epithelial Branching

(2020) Randee E. Young et al.   DEVELOPMENTAL CELL

Myofibroblast contraction is essential for generating and regenerating the gas-exchange surface

(2020) Rongbo Li et al.   JOURNAL OF CLINICAL INVESTIGATION

Capillary cell-type specialization in the alveolus

(2020) Astrid Gillich et al.   NATURE

Hippo signaling promotes lung epithelial lineage commitment by curbing Fgf10 and β-catenin signaling

(2019) Thomas Volckaert et al.   DEVELOPMENT

Early lineage specification defines alveolar epithelial ontogeny in the murine lung

(2019) David B. Frank et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Single-cell connectomic analysis of adult mammalian lungs

(2019) Micha Sam Brickman Raredon et al.   Science Advances

Novel Molecular and Phenotypic Insights into Congenital Lung Malformations

(2018) Daniel T. Swarr et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics

(2018) Kelly Street et al.   BMC GENOMICS

The Strength of Mechanical Forces Determines the Differentiation of Alveolar Epithelial Cells

(2018) Jiao Li et al.   DEVELOPMENTAL CELL

Integrating single-cell transcriptomic data across different conditions, technologies, and species

(2018) Andrew Butler et al.   NATURE BIOTECHNOLOGY

Single-cell Wnt signaling niches maintain stemness of alveolar type 2 cells

(2018) Ahmad N. Nabhan et al.   SCIENCE

Regeneration of the lung alveolus by an evolutionarily conserved epithelial progenitor

(2018) William J. Zacharias et al.   NATURE

Lats1/2 inactivation reveals Hippo function in alveolar type I cell differentiation during lung transition to air breathing

(2018) Leah B. Nantie et al.   DEVELOPMENT

chromVAR: inferring transcription-factor-associated accessibility from single-cell epigenomic data

(2017) Alicia N Schep et al.   NATURE METHODS

A three-dimensional study of alveologenesis in mouse lung

(2016) Kelsey Branchfield et al.   DEVELOPMENTAL BIOLOGY

Emergence of a Wave of Wnt Signaling that Regulates Lung Alveologenesis by Controlling Epithelial Self-Renewal and Differentiation

(2016) David B. Frank et al.   Cell Reports

destiny: diffusion maps for large-scale single-cell data in R

(2015) Philipp Angerer et al.   BIOINFORMATICS

The development and plasticity of alveolar type 1 cells

(2015) Jun Yang et al.   DEVELOPMENT

Hedgehog actively maintains adult lung quiescence and regulates repair and regeneration

(2015) Tien Peng et al.   NATURE

Progenitors of Secondary Crest Myofibroblasts Are Developmentally Committed in Early Lung Mesoderm

(2015) Changgong Li et al.   STEM CELLS

A draft network of ligand–receptor-mediated multicellular signalling in human

(2015) Jordan A. Ramilowski et al.   Nature Communications

Wnt ligand/Frizzled 2 receptor signaling regulates tube shape and branch-point formation in the lung through control of epithelial cell shape

(2014) R. S. Kadzik et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Two nested developmental waves demarcate a compartment boundary in the mouse lung

(2014) Denise Martinez Alanis et al.   Nature Communications

Coordination of heart and lung co-development by a multipotent cardiopulmonary progenitor

(2013) Tien Peng et al.   NATURE

Lung epithelial branching program antagonizes alveolar differentiation

(2013) D. R. Chang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sox9 plays multiple roles in the lung epithelium during branching morphogenesis

(2013) B. E. Rockich et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Spatial organization of the extracellular matrix regulates cell-cell junction positioning

(2012) Q. Tseng et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Wnt2 signaling is necessary and sufficient to activate the airway smooth muscle program in the lung by regulating myocardin/Mrtf-B and Fgf10 expression

(2011) Ashley M. Goss et al.   DEVELOPMENTAL BIOLOGY

Scale: a chemical approach for fluorescence imaging and reconstruction of transparent mouse brain

(2011) Hiroshi Hama et al.   NATURE NEUROSCIENCE

Activation of the WNT/β-Catenin Pathway Attenuates Experimental Emphysema

(2010) Nikolaus Kneidinger et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

The Id2+ distal tip lung epithelium contains individual multipotent embryonic progenitor cells

(2009) E. L. Rawlins et al.   DEVELOPMENT

Wnt2/2b and β-Catenin Signaling Are Necessary and Sufficient to Specify Lung Progenitors in the Foregut

(2009) Ashley M. Goss et al.   DEVELOPMENTAL CELL

Efficient temporally-controlled targeted mutagenesis in smooth muscle cells of the adult mouse

(2008) Olivia Wendling et al.   GENESIS