Ancient mitochondrial genomes from Chinese cave hyenas provide insights into the evolutionary history of the genus Crocuta

Hyena paleogenomes reveal a complex evolutionary history of cross-continental gene flow between spotted and cave hyena

(2020) Michael V. Westbury et al.   Science Advances

Palaeoproteomic analysis of Pleistocene cave hyenas from east Asia

(2020) Huiyun Rao et al.   Scientific Reports

Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits

(2019) Lei Chen et al.   SCIENCE

Extended and Continuous Decline in Effective Population Size Results in Low Genomic Diversity in the World’s Rarest Hyena Species, the Brown Hyena

(2018) Michael V Westbury et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Bayesian Analysis of Radiocarbon Dates

(2016) Christopher Bronk Ramsey   RADIOCARBON

ANGSD: Analysis of Next Generation Sequencing Data

(2014) Thorfinn Sand Korneliussen et al.   BMC BIOINFORMATICS

mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters

(2013) Hákon Jónsson et al.   BIOINFORMATICS

An integrative variant analysis pipeline for accurate genotype/haplotype inference in population NGS data

(2013) Y. Wang et al.   GENOME RESEARCH

Pleistocene Chinese cave hyenas and the recent Eurasian history of the spotted hyena,Crocuta crocuta

(2013) Gui-Lian Sheng et al.   MOLECULAR ECOLOGY

New radiocarbon evidence on the extirpation of the spotted hyaena (Crocuta crocuta (Erxl.)) in northern Eurasia

(2013) Anthony J. Stuart et al.   QUATERNARY SCIENCE REVIEWS

IntCal13 and Marine13 Radiocarbon Age Calibration Curves 0–50,000 Years cal BP

(2013) Paula J Reimer et al.   RADIOCARBON

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

(2012) R. Lanfear et al.   MOLECULAR BIOLOGY AND EVOLUTION

Coprolites as a source of information on the genome and diet of the cave hyena

(2012) C. Bon et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The earliest Middle Pleistocene Crocuta crocuta (Erxleben, 1777) at Casal Selce (Rome, Italy)

(2012) Raffaele Sardella et al.   QUATERNARY INTERNATIONAL

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Taxonomy and evolutionary patterns in the fossil Hyaenidae of Europe

(2008) Alan Turner et al.   GEOBIOS

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY