Want to track pandemic variants faster? Fix the bioinformatics bottleneck

Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK

(2021) Louis du Plessis et al.   SCIENCE

Scientists call for fully open sharing of coronavirus genome data

(2021) Richard Van Noorden   NATURE

Deep mutational scanning of SARS-CoV-2 receptor binding domain reveals constraints on folding and ACE2 binding

(2020) Tyler N. Starr et al.   CELL

Phylogenetic analysis of SARS-CoV-2 in Boston highlights the impact of superspreading events

(2020) Jacob E. Lemieux et al.   SCIENCE

Genomic epidemiology reveals transmission patterns and dynamics of SARS-CoV-2 in Aotearoa New Zealand

(2020) Jemma L. Geoghegan et al.   Nature Communications

No evidence for increased transmissibility from recurrent mutations in SARS-CoV-2

(2020) Lucy van Dorp et al.   Nature Communications

Stability of SARS-CoV-2 phylogenies

(2020) Yatish Turakhia et al.   PLoS Genetics

Nextstrain: real-time tracking of pathogen evolution

(2018) James Hadfield et al.   BIOINFORMATICS

Data sharing: Make outbreak research open access

(2015) Nathan L. Yozwiak et al.   NATURE