Chloroplast phylogenomics and character evolution of eastern Asian Astragalus (Leguminosae): Tackling the phylogenetic structure of the largest genus of flowering plants in Asia

Testing morphological trait evolution and assessing species delimitations in the grape genus using a phylogenomic framework

(2020) Zhi-Yao Ma et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes

(2019) Xiao-Jian Qu et al.   Plant Methods

The extinct genus Lagokarpos reveals a biogeographic connection of Tibet with other regions in the Northern Hemisphere during the Paleogene

(2019) He Tang et al.   Journal of Systematics and Evolution

BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis

(2019) Remco Bouckaert et al.   PLoS Computational Biology

Substantial gaps between the protection of biodiversity hotspots in alpine grasslands and the effectiveness of protected areas on the Qinghai-Tibetan Plateau, China

(2019) Xukun Su et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Chloroplast phylogenomic data support Paleocene - Eocene amphi-Pacific early radiation for the Asian Palmate core Araliaceae

(2019) Virginia Valcárcel et al.   Journal of Systematics and Evolution

New insights into the phylogeny and biogeography of subfamily Orontioideae (Araceae)

(2019) Joon Seon Lee et al.   Journal of Systematics and Evolution

Miocene climate change as a driving force for multiple origins of annual species in Astragalus (Fabaceae, Papilionoideae)

(2019) Nasim Azani et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Genomic insight into the ‘Sky Islands’ species diversification in a mountainous biodiversity hotspot

(2019) Dan Zhang et al.   Journal of Systematics and Evolution

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

(2018) Andrew Rambaut et al.   SYSTEMATIC BIOLOGY

Phylogenetics and dispersal patterns of Brassicaceae around the Qinghai-Tibet Plateau

(2018) Chaoju Qian et al.   Journal of Systematics and Evolution

The role of land bridges, ancient environments, and migrations in the assembly of the North American flora

(2018) Alan Graham   Journal of Systematics and Evolution

A detailed study of leaf micromorphology and anatomy of New World Vitis L. subgenus Vitis within a phylogenetic and ecological framework reveals evolutionary convergence

(2018) Stefanie M. Ickert-Bond et al.   Journal of Systematics and Evolution

Dispersal is associated with morphological innovation, but not increased diversification, in Cyphostemma (Vitaceae)

(2018) David J. Hearn et al.   Journal of Systematics and Evolution

Chloroplast phylogenomics of the New World grape species (Vitis , Vitaceae)

(2018) Jun Wen et al.   Journal of Systematics and Evolution

Phylogenomics, biogeography, and adaptive radiation of grapes

(2018) Zhi-Yao Ma et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogeny, biogeography and divergence times of Astragalus section Incani DC. (Fabaceae) inferred from nrDNA ITS and plastid rpl 32-trn L(UAG) sequences

(2018) Elham Amini et al.   NORDIC JOURNAL OF BOTANY

ModelFinder: fast model selection for accurate phylogenetic estimates

(2017) Subha Kalyaanamoorthy et al.   NATURE METHODS

Intercontinental disjunctions between eastern Asia and western North America in vascular plants highlight the biogeographic importance of the Bering land bridge from late Cretaceous to Neogene

(2016) Jun Wen et al.   Journal of Systematics and Evolution

Morphology, Structure, and Ontogeny of Trichomes of the Grape Genus (Vitis, Vitaceae)

(2016) Zhi-Yao Ma et al.   Frontiers in Plant Science

RASP (Reconstruct Ancestral State in Phylogenies): A tool for historical biogeography

(2015) Yan Yu et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Molecular phylogeny of Astragalus section Anthylloidei (Fabaceae) inferred from nrDNA ITS and plastid rpl32-trnL(UAG) sequence data

(2014) Kosar NADERI SAFAR et al.   TURKISH JOURNAL OF BOTANY

Plant phylogeography in arid Northwest China: Retrospectives and perspectives

(2014) Hong-Hu MENG et al.   Journal of Systematics and Evolution

Evolutionary diversifications of plants on the Qinghai-Tibetan Plateau

(2014) Jun Wen et al.   Frontiers in Genetics

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

(2012) R. Lanfear et al.   MOLECULAR BIOLOGY AND EVOLUTION

Rapid radiation of Rheum (Polygonaceae) and parallel evolution of morphological traits

(2012) Yongshuai Sun et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Phylogeny and character evolution in Medicago (Leguminosae): Evidence from analyses of plastid trnK/matK and nuclear GA3ox1 sequences

(2010) Kelly P. Steele et al.   AMERICAN JOURNAL OF BOTANY

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Phylogenetic Origin ofPhyllolobiumwith a Further Implication for Diversification ofAstragalusin China

(2009) Mingli Zhang et al.   Journal of Integrative Plant Biology

Molecular phylogeny of selected Old WorldAstragalus(Fabaceae): incongruence among chloroplasttrnL-F, ndhFand nuclear ribosomal DNA ITS sequences

(2009) Marzie Kazemi et al.   NORDIC JOURNAL OF BOTANY

Phylogeny, biogeography, and rates of diversification of New World Astragalus (Leguminosae) with an emphasis on South American radiations

(2008) R. A. Scherson et al.   AMERICAN JOURNAL OF BOTANY