Genomics Reveals the Origins of Historical Specimens

Gypsy moth genome provides insights into flight capability and virus–host interactions

(2019) Jing Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomes of skipper butterflies reveal extensive convergence of wing patterns

(2019) Wenlin Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High-quality genome assembly of the silkworm, Bombyx mori

(2019) Munetaka Kawamoto et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

Genomes reveal drastic and recurrent phenotypic divergence in firetip skipper butterflies (Hesperiidae: Pyrrhopyginae)

(2019) Jing Zhang et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Conservation and flexibility in the gene regulatory landscape of heliconiine butterfly wings

(2019) Joseph J. Hanly et al.   EvoDevo

Middle Stone Age foragers resided in high elevations of the glaciated Bale Mountains, Ethiopia

(2019) Götz Ossendorf et al.   SCIENCE

Review and Interpretation of Trends in DNA Barcoding

(2019) Rob DeSalle et al.   Frontiers in Ecology and Evolution

Species Tree Inference with BPP Using Genomic Sequences and the Multispecies Coalescent

(2018) Tomáš Flouri et al.   MOLECULAR BIOLOGY AND EVOLUTION

UniProt: a worldwide hub of protein knowledge

(2018)   NUCLEIC ACIDS RESEARCH

FlyBase 2.0: the next generation

(2018) Jim Thurmond et al.   NUCLEIC ACIDS RESEARCH

The first complete genomes of Metalmarks and the classification of butterfly families

(2017) Qian Cong et al.   GENOMICS

Nuclear genomes distinguish cryptic species suggested by their DNA barcodes and ecology

(2017) Daniel H. Janzen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Macroevolutionary shifts ofWntAfunction potentiate butterfly wing-pattern diversity

(2017) Anyi Mazo-Vargas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Shank Modulates Postsynaptic Wnt Signaling to Regulate Synaptic Development

(2016) K. P. Harris et al.   JOURNAL OF NEUROSCIENCE

Complete genomes of Hairstreak butterflies, their speciation and nucleo-mitochondrial incongruence

(2016) Qian Cong et al.   Scientific Reports

Major Improvements to the Heliconius melpomene Genome Assembly Used to Confirm 10 Chromosome Fusion Events in 6 Million Years of Butterfly Evolution

(2016) John W. Davey et al.   G3-Genes Genomes Genetics

The BPP program for species tree estimation and species delimitation

(2015) Ziheng Yang   Current Zoology

An Updated Itinerary of Theodore L. Mead in Colorado in 1871, with Type Locality Clarifications and a Lectotype Designation forMelitaea eurytionMead (Nymphalidae)

(2015) John V. Calhoun   JOURNAL OF THE LEPIDOPTERISTS SOCIETY

A New Name for Alpine Populations ofHesperia colorado(Scudder) (Hesperiidae, Hesperiinae) in Colorado

(2015) Andrew D. Warren et al.   JOURNAL OF THE LEPIDOPTERISTS SOCIETY

Outbred genome sequencing and CRISPR/Cas9 gene editing in butterflies

(2015) Xueyan Li et al.   Nature Communications

Tiger Swallowtail Genome Reveals Mechanisms for Speciation and Caterpillar Chemical Defense

(2015) Qian Cong et al.   Cell Reports

The BPP program for species tree estimation and species delimitation

(2015) Ziheng Yang   Current Zoology

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Wnt signaling underlies evolution and development of the butterfly wing pattern symmetry systems

(2014) Arnaud Martin et al.   DEVELOPMENTAL BIOLOGY

Evaluating the Use of ABBA–BABA Statistics to Locate Introgressed Loci

(2014) Simon H. Martin et al.   MOLECULAR BIOLOGY AND EVOLUTION

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Gene Ontology Consortium: going forward

(2014)   NUCLEIC ACIDS RESEARCH

FlyBase: introduction of the Drosophila melanogaster Release 6 reference genome assembly and large-scale migration of genome annotations

(2014) G. dos Santos et al.   NUCLEIC ACIDS RESEARCH

Structural basis for the recruitment of glycogen synthase by glycogenin

(2014) E. Zeqiraj et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

Diversification of complex butterfly wing patterns by repeated regulatory evolution of a Wnt ligand

(2012) A. Martin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

(2012) Joseph K. Pickrell et al.   PLoS Genetics

The Monarch Butterfly Genome Yields Insights into Long-Distance Migration

(2011) Shuai Zhan et al.   CELL

POPULATION GENETICS AND OBJECTIVITY IN SPECIES DIAGNOSIS

(2011) Jody Hey et al.   EVOLUTION

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Genetics in geographically structured populations: defining, estimating and interpreting FST

(2009) Kent E. Holsinger et al.   NATURE REVIEWS GENETICS

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

(2008) Brian J Haas et al.   GENOME BIOLOGY