Systems metabolic engineering of Vibrio natriegens for the production of 1,3-propanediol

Engineering of phosphoserine aminotransferase increases the conversion of L‐homoserine to 4‐hydroxy‐2‐ketobutyrate in a glycerol‐independent pathway of 1,3‐propanediol production from glucose

(2019) Yujun Zhang et al.   Biotechnology Journal

Metabolic Engineering of a Homoserine-Derived Non-Natural Pathway for the De Novo Production of 1,3-Propanediol from Glucose

(2019) Weiqun Zhong et al.   ACS Synthetic Biology

Construction of artificial micro-aerobic metabolism for energy- and carbon-efficient synthesis of medium chain fatty acids in Escherichia coli

(2019) Junjun Wu et al.   METABOLIC ENGINEERING

Functional genomics of the rapidly replicating bacterium Vibrio natriegens by CRISPRi

(2019) Henry H. Lee et al.   Nature Microbiology

Construction of a synthetic pathway for the production of 1,3-propanediol from glucose

(2019) Cláudio J. R. Frazão et al.   Scientific Reports

Metabolic engineering of carbon overflow metabolism of Bacillus subtilis for improved N-acetyl-glucosamine production

(2018) Wenlong Ma et al.   BIORESOURCE TECHNOLOGY

Production of 1,3-Propanediol from Glucose by Recombinant Escherichia coli BL21(DE3)

(2018) Jae Hyeon Lee et al.   BIOTECHNOLOGY AND BIOPROCESS ENGINEERING

High-yield production of 1,3-propanediol from glycerol by metabolically engineered Klebsiella pneumoniae

(2018) Jung Hun Lee et al.   Biotechnology for Biofuels

Advances in bioconversion of glycerol to 1,3-propanediol: Prospects and challenges

(2018) Ya-Qin Sun et al.   PROCESS BIOCHEMISTRY

Adaptive Evolution of Clostridium butyricum and Scale-up for High-Concentration 1,3-propanediol Production

(2018) Ai-Hui Zhang et al.   AICHE JOURNAL

Microbial Cell Factories à la Carte: Elimination of Global Regulators Cra and ArcA Generates Metabolic Backgrounds Suitable for the Synthesis of Bioproducts in Escherichia coli

(2018) Diego E. Egoburo et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metabolic engineering of Escherichia coli for de novo biosynthesis of vitamin B12

(2018) Huan Fang et al.   Nature Communications

High tolerance to glycerol and high production of 1,3-propanediol in batch fermentations by microbial consortium from marine sludge

(2017) LiLi Jiang et al.   ENGINEERING IN LIFE SCIENCES

Coordination of metabolic pathways: Enhanced carbon conservation in 1,3-propanediol production by coupling with optically pure lactate biosynthesis

(2017) Bo Xin et al.   METABOLIC ENGINEERING

Industrial biomanufacturing: The future of chemical production

(2017) James M. Clomburg et al.   SCIENCE

Biological valorization of pure and crude glycerol into 1,3-propanediol using a novel isolate Lactobacillus brevis N1E9.3.3

(2016) Narisetty Vivek et al.   BIORESOURCE TECHNOLOGY

Vibrio natriegens as a fast-growing host for molecular biology

(2016) Matthew T Weinstock et al.   NATURE METHODS

Advanced Biotechnology: Metabolically Engineered Cells for the Bio-Based Production of Chemicals and Fuels, Materials, and Health-Care Products

(2015) Judith Becker et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Deletion of poxB, pta, and ackA improves 1,3-propanediol production by Klebsiella pneumoniae

(2015) Jie Lin et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Genetic engineering to improve 1,3-propanediol production in an isolated Citrobacter freundii strain

(2015) Ewelina Celińska et al.   PROCESS BIOCHEMISTRY

A review: Conversion of bioglycerol into 1,3-propanediol via biological and chemical method

(2015) C.S. Lee et al.   RENEWABLE & SUSTAINABLE ENERGY REVIEWS

Seven gene deletions in seven days: Fast generation of Escherichia coli strains tolerant to acetate and osmotic stress

(2015) Sheila I. Jensen et al.   Scientific Reports

CIDAR MoClo: Improved MoClo Assembly Standard and New E. coli Part Library Enable Rapid Combinatorial Design for Synthetic and Traditional Biology

(2015) Sonya V. Iverson et al.   ACS Synthetic Biology

Integrated study of fermentation and downstream processing in a miniplant significantly improved the microbial 1,3-propanediol production from raw glycerol

(2014) Thomas Kaeding et al.   BIOPROCESS AND BIOSYSTEMS ENGINEERING

Open and continuous fermentation: Products, conditions and bioprocess economy

(2014) Teng Li et al.   Biotechnology Journal

Protein design and engineering of a de novo pathway for microbial production of 1,3-propanediol from glucose

(2014) Zhen Chen et al.   Biotechnology Journal

Multiplex genome editing by natural transformation

(2014) A. B. Dalia et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Recombinant expression of glpK and glpD genes improves the accumulation of shikimic acid in E. coli grown on glycerol

(2014) Yang Yang et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Deregulation of Feedback Inhibition of Phosphoenolpyruvate Carboxylase for Improved Lysine Production in Corynebacterium glutamicum

(2013) Zhen Chen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Ethanol Production by Repeated Batch and Continuous Fermentations by Saccharomyces cerevisiae Immobilized in a Fibrous Bed Bioreactor

(2013) Yong Chen   JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY

Overexpression of Genes Encoding Glycolytic Enzymes in Corynebacterium glutamicum Enhances Glucose Metabolism and Alanine Production under Oxygen Deprivation Conditions

(2012) Shogo Yamamoto et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The production of 1,3-propanediol from mixtures of glycerol and glucose by a Klebsiella pneumoniae mutant deficient in carbon catabolite repression

(2012) Baek-Rock Oh et al.   BIORESOURCE TECHNOLOGY

The role of GlpR repressor inPseudomonas putidaKT2440 growth and PHA production from glycerol

(2012) I. F. Escapa et al.   ENVIRONMENTAL MICROBIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Stoichiometry of proton pumping by the cbb3-type oxygen reductase in whole cells of Rhodobacter capsulatus at pH 7 is about 0.5 H+ per electron

(2012) R. Murali et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Glycerol conversion to 1, 3-Propanediol is enhanced by the expression of a heterologous alcohol dehydrogenase gene in Lactobacillus reuteri

(2012) Hema Vaidyanathan et al.   AMB Express

Production of 1,3-propanediol by Clostridium butyricum growing on biodiesel-derived crude glycerol through a non-sterilized fermentation process

(2011) Afroditi Chatzifragkou et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Biogenesis of cbb3-type cytochrome c oxidase in Rhodobacter capsulatus

(2011) Seda Ekici et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Economical challenges to microbial producers of butanol: Feedstock, butanol ratio and titer

(2011) Yang Gu et al.   Biotechnology Journal

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Microbial production of diols as platform chemicals: Recent progresses

(2011) An-Ping Zeng et al.   CURRENT OPINION IN BIOTECHNOLOGY

From zero to hero—Design-based systems metabolic engineering of Corynebacterium glutamicum for l-lysine production

(2011) Judith Becker et al.   METABOLIC ENGINEERING

Engineering of Corynebacterium glutamicum with an NADPH-Generating Glycolytic Pathway for L-Lysine Production

(2010) S. Takeno et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Technological trends, global market, and challenges of bio-ethanol production

(2010) Solange I. Mussatto et al.   BIOTECHNOLOGY ADVANCES

The Structure of cbb3 Cytochrome Oxidase Provides Insights into Proton Pumping

(2010) S. Buschmann et al.   SCIENCE

Microbial Fed-batch Production of 1,3-Propanediol Using Raw Glycerol with Suspended and Immobilized Klebsiella pneumoniae

(2009) Sun-Ae Jun et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Effects of arcA and arcB genes knockout on the metabolism in Escherichia coli under aerobic condition

(2009) Syed Asif Nizam et al.   BIOCHEMICAL ENGINEERING JOURNAL

Generation of marker-free transgenic maize with improved salt tolerance using the FLP/FRT recombination system

(2009) Bei Li et al.   JOURNAL OF BIOTECHNOLOGY

SOAP: short oligonucleotide alignment program

(2008) R. Li et al.   BIOINFORMATICS