Realistic Microstructure Simulator (RMS): Monte Carlo simulations of diffusion in three-dimensional cell segmentations of microscopy images

Noninvasive quantification of axon radii using diffusion MRI

(2020) Jelle Veraart et al.   eLife

In vivo observation and biophysical interpretation of time-dependent diffusion in human cortical gray matter

(2020) Hong-Hsi Lee et al.   NEUROIMAGE

The impact of realistic axonal shape on axon diameter estimation using diffusion MRI

(2020) Hong-Hsi Lee et al.   NEUROIMAGE

A time-dependent diffusion MRI signature of axon caliber variations and beading

(2020) Hong-Hsi Lee et al.   Communications Biology

ConFiG: Contextual Fibre Growth to generate realistic axonal packing for diffusion MRI simulation

(2020) Ross Callaghan et al.   NEUROIMAGE

Intra-axonal diffusivity in brain white matter

(2019) Bibek Dhital et al.   NEUROIMAGE

Along-axon diameter variation and axonal orientation dispersion revealed with 3D electron microscopy: implications for quantifying brain white matter microstructure with histology and diffusion MRI

(2019) Hong-Hsi Lee et al.   Brain Structure & Function

MEDUSA: A GPU-based tool to create realistic phantoms of the brain microstructure using tiny spheres

(2019) Kévin Ginsburger et al.   NEUROIMAGE

Time‐dependent diffusion in undulating thin fibers: Impact on axon diameter estimation

(2019) Jan Brabec et al.   NMR IN BIOMEDICINE

On modeling

(2018) Dmitry S. Novikov et al.   MAGNETIC RESONANCE IN MEDICINE

Rotationally-invariant mapping of scalar and orientational metrics of neuronal microstructure with diffusion MRI

(2018) Dmitry S. Novikov et al.   NEUROIMAGE

Physical and numerical phantoms for the validation of brain microstructural MRI: A cookbook

(2018) Els Fieremans et al.   NEUROIMAGE

Efficient GPU-based Monte-Carlo simulation of diffusion in real astrocytes reconstructed from confocal microscopy

(2018) Khieu Van Nguyen et al.   JOURNAL OF MAGNETIC RESONANCE

On the scaling behavior of water diffusion in human brain white matter

(2018) Jelle Veraart et al.   NEUROIMAGE

Quantifying brain microstructure with diffusion MRI: Theory and parameter estimation

(2018) Dmitry S. Novikov et al.   NMR IN BIOMEDICINE

A generative model of realistic brain cells with application to numerical simulation of the diffusion-weighted MR signal

(2018) Marco Palombo et al.   NEUROIMAGE

Multidimensional diffusion MRI

(2017) Daniel Topgaard   JOURNAL OF MAGNETIC RESONANCE

The effect of realistic geometries on the susceptibility-weighted MR signal in white matter

(2017) Tianyou Xu et al.   MAGNETIC RESONANCE IN MEDICINE

Can we detect the effect of spines and leaflets on the diffusion of brain intracellular metabolites?

(2017) Marco Palombo et al.   NEUROIMAGE

Fundamentals of diffusion MRI physics

(2017) Valerij G. Kiselev   NMR IN BIOMEDICINE

Fiber ball imaging

(2016) Jens H. Jensen et al.   NEUROIMAGE

In vivo observation and biophysical interpretation of time-dependent diffusion in human white matter

(2016) Els Fieremans et al.   NEUROIMAGE

A revised model for estimating g-ratio from MRI

(2016) Kathryn L. West et al.   NEUROIMAGE

Simulations on the influence of myelin water in diffusion-weighted imaging

(2016) K D Harkins et al.   PHYSICS IN MEDICINE AND BIOLOGY

Mesoscopic structure of neuronal tracts from time-dependent diffusion

(2015) Lauren M. Burcaw et al.   NEUROIMAGE

Revealing mesoscopic structural universality with diffusion

(2014) D. S. Novikov et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microstructural organization of axons in the human corpus callosum quantified by diffusion-weighted magnetic resonance spectroscopy of N-acetylaspartate and post-mortem histology

(2013) Itamar Ronen et al.   Brain Structure & Function

A computational model for diffusion weighted imaging of myelinated white matter

(2013) Gregory T. Baxter et al.   NEUROIMAGE

Diffusion Microscopist Simulator: A General Monte Carlo Simulation System for Diffusion Magnetic Resonance Imaging

(2013) Chun-Hung Yeh et al.   PLoS One

Investigation of different boundary treatment methods in Monte-Carlo simulations of diffusion NMR

(2012) Haoyang Xing et al.   MAGNETIC RESONANCE IN MEDICINE

GPU accelerated Monte Carlo simulation of pulsed-field gradient NMR experiments

(2011) Christopher A. Waudby et al.   JOURNAL OF MAGNETIC RESONANCE

Random walks with barriers

(2011) Dmitry S. Novikov et al.   Nature Physics

The importance of axonal undulation in diffusion MR measurements: a Monte Carlo simulation study

(2011) Markus Nilsson et al.   NMR IN BIOMEDICINE

Monte Carlo study of a two-compartment exchange model of diffusion

(2010) Els Fieremans et al.   NMR IN BIOMEDICINE

Convergence and Parameter Choice for Monte-Carlo Simulations of Diffusion MRI

(2009) M.G. Hall et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Sensitivity of diffusion weighted steady state free precession to anisotropic diffusion

(2008) Jennifer A. McNab et al.   MAGNETIC RESONANCE IN MEDICINE

Simulation and experimental verification of the diffusion in an anisotropic fiber phantom

(2007) Els Fieremans et al.   JOURNAL OF MAGNETIC RESONANCE