Diabetes changes gene expression but not DNA methylation in cardiac cells

Single-Cell Transcriptome Analysis Maps the Developmental Track of the Human Heart

(2019) Yueli Cui et al.   Cell Reports

Epigenetics in Human Obesity and Type 2 Diabetes

(2019) Charlotte Ling et al.   Cell Metabolism

O-GlcNAcylation of Histone Deacetylase 4 Protects the Diabetic Heart from Failure

(2019) Mariya Kronlage et al.   CIRCULATION

The Extracellular Matrix in Ischemic and Nonischemic Heart Failure

(2019) Nikolaos G. Frangogiannis   CIRCULATION RESEARCH

Cardiac Endothelial Cell TranscriptomeHighlights

(2018) Achim Lother et al.   ARTERIOSCLEROSIS THROMBOSIS AND VASCULAR BIOLOGY

Histones and heart failure in diabetes

(2018) Veera Ganesh Yerra et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Diabetic Cardiomyopathy

(2018) Guanghong Jia et al.   CIRCULATION RESEARCH

Galaxy HiCExplorer: a web server for reproducible Hi-C data analysis, quality control and visualization

(2018) Joachim Wolff et al.   NUCLEIC ACIDS RESEARCH

Distinct epigenetic programs regulate cardiac myocyte development and disease in the human heart in vivo

(2018) Ralf Gilsbach et al.   Nature Communications

Single-Cell Transcriptional Profiling Reveals Cellular Diversity and Intercommunication in the Mouse Heart

(2018) Daniel A. Skelly et al.   Cell Reports

The epigenetic landscape in the cardiovascular complications of diabetes

(2018) S. Costantino et al.   JOURNAL OF ENDOCRINOLOGICAL INVESTIGATION

Cell-type deconvolution from DNA methylation: a review of recent applications

(2017) Alexander J. Titus et al.   HUMAN MOLECULAR GENETICS

DNA methylation signatures follow preformed chromatin compartments in cardiac myocytes

(2017) Stephan Nothjunge et al.   Nature Communications

Cardiac transcriptome profiling of diabetic Akita mice using microarray and next generation sequencing

(2017) Varun Kesherwani et al.   PLoS One

Endothelial cell–cardiomyocyte crosstalk in diabetic cardiomyopathy

(2016) Andrea Wan et al.   CARDIOVASCULAR RESEARCH

The H3K9 dimethyltransferases EHMT1/2 protect against pathological cardiac hypertrophy

(2016) Bernard Thienpont et al.   JOURNAL OF CLINICAL INVESTIGATION

Ablation of biglycan attenuates cardiac hypertrophy and fibrosis after left ventricular pressure overload

(2016) Nadine Beetz et al.   JOURNAL OF MOLECULAR AND CELLULAR CARDIOLOGY

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update

(2016) Enis Afgan et al.   NUCLEIC ACIDS RESEARCH

Genetic lineage tracing defines myofibroblast origin and function in the injured heart

(2016) Onur Kanisicak et al.   Nature Communications

Deletion of interleukin-6 alleviated interstitial fibrosis in streptozotocin-induced diabetic cardiomyopathy of mice through affecting TGFβ1 and miR-29 pathways

(2016) Yang Zhang et al.   Scientific Reports

Dynamics of Cell Generation and Turnover in the Human Heart

(2015) Olaf Bergmann et al.   CELL

Deciphering the Epigenetic Code of Cardiac Myocyte TranscriptionNovelty and Significance

(2015) Sebastian Preissl et al.   CIRCULATION RESEARCH

Revisiting Cardiac Cellular CompositionNovelty and Significance

(2015) Alexander R. Pinto et al.   CIRCULATION RESEARCH

Cardiac Nonmyocytes in the Hub of Cardiac Hypertrophy

(2015) T. Kamo et al.   CIRCULATION RESEARCH

Epigenomic Signatures of Neuronal Diversity in the Mammalian Brain

(2015) Alisa Mo et al.   NEURON

Embryonic and Adult-Derived Resident Cardiac Macrophages Are Maintained through Distinct Mechanisms at Steady State and during Inflammation

(2014) Slava Epelman et al.   IMMUNITY

deepTools: a flexible platform for exploring deep-sequencing data

(2014) Fidel Ramírez et al.   NUCLEIC ACIDS RESEARCH

Ensembl 2015

(2014) Fiona Cunningham et al.   NUCLEIC ACIDS RESEARCH

Dynamic DNA methylation orchestrates cardiomyocyte development, maturation and disease

(2014) Ralf Gilsbach et al.   Nature Communications

Epigenetic memory at embryonic enhancers identified in DNA methylation maps from adult mouse tissues

(2013) Gary C Hon et al.   NATURE GENETICS

Tagmentation-based whole-genome bisulfite sequencing

(2013) Qi Wang et al.   Nature Protocols

Identification of active regulatory regions from DNA methylation data

(2013) Lukas Burger et al.   NUCLEIC ACIDS RESEARCH

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Lipid Metabolism and Toxicity in the Heart

(2012) Ira J. Goldberg et al.   Cell Metabolism

Efficient inducible Cre-mediated recombination in Tcf21cell lineages in the heart and kidney

(2011) Asha Acharya et al.   GENESIS

Glycaemic control and incidence of heart failure in 20 985 patients with type 1 diabetes: an observational study

(2011) Marcus Lind et al.   LANCET

DNA-binding factors shape the mouse methylome at distal regulatory regions

(2011) Michael B. Stadler et al.   NATURE

Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities

(2010) Sven Heinz et al.   MOLECULAR CELL

GREAT improves functional interpretation of cis-regulatory regions

(2010) Cory Y McLean et al.   NATURE BIOTECHNOLOGY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Myocardial Fatty Acid Metabolism in Health and Disease

(2010) Gary D. Lopaschuk et al.   PHYSIOLOGICAL REVIEWS

ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks

(2009) Gabriela Bindea et al.   BIOINFORMATICS