Proteomics of developing pea seeds reveals a complex antioxidant network underlying the response to sulfur deficiency and water stress

Overexpression of the Selective Autophagy Cargo Receptor NBR1 Modifies Plant Response to Sulfur Deficit

(2020) Leszek Tarnowski et al.   Cells

Coordinating Sulfur Pools under Sulfate Deprivation

(2020) Fayezeh Aarabi et al.   TRENDS IN PLANT SCIENCE

Systematic Multi-Omics Integration (MOI) Approach in Plant Systems Biology

(2020) Ili Nadhirah Jamil et al.   Frontiers in Plant Science

DIABLO: an integrative approach for identifying key molecular drivers from multi-omic assays

(2019) Amrit Singh et al.   BIOINFORMATICS

Cytosolic Glucose-6-Phosphate Dehydrogenase Is Involved in Seed Germination and Root Growth Under Salinity in Arabidopsis

(2019) Lei Yang et al.   Frontiers in Plant Science

Central role of the LEAFY COTYLEDON1 transcription factor in seed development

(2019) Leonardo Jo et al.   Journal of Integrative Plant Biology

Water stress combined with S-deficiency in pea affects yield components but mitigates S-deficiency effect on seed transcriptome, rebalancing seed composition

(2019) Charlotte Henriet et al.   JOURNAL OF EXPERIMENTAL BOTANY

Overexpression of three orthologous glutathione S-transferases from Populus increased salt and drought resistance in Arabidopsis

(2019) Qi Yang et al.   BIOCHEMICAL SYSTEMATICS AND ECOLOGY

Epigenetic regulation of sulfur homeostasis in plants

(2019) Xin-Yuan Huang et al.   JOURNAL OF EXPERIMENTAL BOTANY

A reference genome for pea provides insight into legume genome evolution

(2019) Jonathan Kreplak et al.   NATURE GENETICS

dynGENIE3: dynamical GENIE3 for the inference of gene networks from time series expression data

(2018) Vân Anh Huynh-Thu et al.   Scientific Reports

Molecular and epigenetic regulations and functions of the LAFL transcriptional regulators that control seed development

(2018) L. Lepiniec et al.   Plant Reproduction

Sulfate is incorporated into cysteine to trigger ABA production and stomata closure

(2018) Sundas Batool et al.   PLANT CELL

Quantitative Proteomics Analysis Confirmed Oxidative Metabolism Predominates in Streptomyces coelicolor versus Glycolytic Metabolism in Streptomyces lividans

(2017) Aaron Millan-Oropeza et al.   JOURNAL OF PROTEOME RESEARCH

Proteomics analysis identified a DRT protein involved in arsenic resistance in Populus

(2017) Yanli Liu et al.   PLANT CELL REPORTS

Grain subproteome responses to nitrogen and sulfur supply in diploid wheat Triticum monococcum ssp. monococcum

(2017) Titouan Bonnot et al.   PLANT JOURNAL

mixOmics: An R package for ‘omics feature selection and multiple data integration

(2017) Florian Rohart et al.   PLoS Computational Biology

X!TandemPipeline: A Tool to Manage Sequence Redundancy for Protein Inference and Phosphosite Identification

(2016) Olivier Langella et al.   JOURNAL OF PROTEOME RESEARCH

Suppression of Chloroplastic Alkenal/One Oxidoreductase Represses the Carbon Catabolic Pathway in Arabidopsis Leaves during Night

(2016) Daisuke Takagi et al.   PLANT PHYSIOLOGY

Role of the NAD(P)H quinone oxidoreductase NQR and the cytochrome b AIR12 in controlling superoxide generation at the plasma membrane

(2016) Catherine Biniek et al.   PLANTA

Nuclear Localised MORE SULPHUR ACCUMULATION1 Epigenetically Regulates Sulphur Homeostasis in Arabidopsis thaliana

(2016) Xin-Yuan Huang et al.   PLoS Genetics

Impairment of Sulfite Reductase Decreases Oxidative Stress Tolerance in Arabidopsis thaliana

(2016) Meiping Wang et al.   Frontiers in Plant Science

Sulfur deficiency-induced repressor proteins optimize glucosinolate biosynthesis in plants

(2016) F. Aarabi et al.   Science Advances

Protein Methionine Sulfoxide Dynamics inArabidopsis thalianaunder Oxidative Stress

(2015) Silke Jacques et al.   MOLECULAR & CELLULAR PROTEOMICS

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

Full-lengthde novoassembly of RNA-seq data in pea (Pisum sativumL.) provides a gene expression atlas and gives insights into root nodulation in this species

(2015) Susete Alves-Carvalho et al.   PLANT JOURNAL

Methylome analysis reveals an important role for epigenetic changes in the regulation of theArabidopsisresponse to phosphate starvation

(2015) Lenin Yong-Villalobos et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The family of LSU-like proteins

(2015) Agnieszka Sirko et al.   Frontiers in Plant Science

Comparative Transcriptomic Analyses of Vegetable and Grain Pea (Pisum sativum L.) Seed Development

(2015) Na Liu et al.   Frontiers in Plant Science

ROS Regulation During Abiotic Stress Responses in Crop Plants

(2015) Jun You et al.   Frontiers in Plant Science

MSRB7 reverses oxidation of GSTF2/3 to confer tolerance of Arabidopsis thaliana to oxidative stress

(2014) Shu-Hong Lee et al.   JOURNAL OF EXPERIMENTAL BOTANY

Molecular mechanisms of regulation of sulfate assimilation: first steps on a long road

(2014) Anna Koprivova et al.   Frontiers in Plant Science

Physical, metabolic and developmental functions of the seed coat

(2014) Volodymyr Radchuk et al.   Frontiers in Plant Science

Integrated Analysis of Transcriptomic and Proteomic Data

(2013) Saad Haider et al.   CURRENT GENOMICS

A Central Role for Thiols in Plant Tolerance to Abiotic Stress

(2013) Lyuben Zagorchev et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Legume adaptation to sulfur deficiency revealed by comparing nutrient allocation and seed traits inMedicago truncatula

(2013) Hélène Zuber et al.   PLANT JOURNAL

Natural Variation in the ATPS1 Isoform of ATP Sulfurylase Contributes to the Control of Sulfate Levels in Arabidopsis

(2013) A. Koprivova et al.   PLANT PHYSIOLOGY

Management and dissemination of MS proteomic data with PROTICdb: Example of a quantitative comparison between methods of protein extraction

(2013) Olivier Langella et al.   PROTEOMICS

Chloroplastic NADPH-dependent alkenal/one oxidoreductase contributes to the detoxification of reactive carbonyls produced under oxidative stress

(2012) Yasuo Yamauchi et al.   FEBS LETTERS

Arabidopsis Root-Abundant Cytosolic Methionine Sulfoxide Reductase B Genes MsrB7 and MsrB8 are Involved in Tolerance to Oxidative Stress

(2012) Chia-Wen Li et al.   PLANT AND CELL PHYSIOLOGY

Balancing metabolites in drought: the sulfur assimilation conundrum

(2012) Kai Xun Chan et al.   TRENDS IN PLANT SCIENCE

Identification and functional analysis of Joka2, a tobacco member of the family of selective autophagy cargo receptors

(2011) Katarzyna Zientara-Rytter et al.   Autophagy

Sparse PLS discriminant analysis: biologically relevant feature selection and graphical displays for multiclass problems

(2011) Kim-Anh Lê Cao et al.   BMC BIOINFORMATICS

MassChroQ: A versatile tool for mass spectrometry quantification

(2011) Benoît Valot et al.   PROTEOMICS

Profile and Functional Properties of Seed Proteins from Six Pea (Pisum sativum) Genotypes

(2010) Miroljub Barac et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

NADPH-dependent Reductases Involved in the Detoxification of Reactive Carbonyls in Plants

(2010) Yasuo Yamauchi et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A chloroplast-localized and auxin-induced glutathione S-transferase from phreatophyte Prosopis juliflora confer drought tolerance on tobacco

(2009) Suja George et al.   JOURNAL OF PLANT PHYSIOLOGY

Comparative Genomic Study of the Thioredoxin Family in Photosynthetic Organisms with Emphasis on Populus trichocarpa

(2009) Kamel Chibani et al.   Molecular Plant

Arabidopsis NF-YB subunits LEC1 and LEC1-LIKE activate transcription by interacting with seed-specific ABRE-binding factors

(2009) Akiko Yamamoto et al.   PLANT JOURNAL

The Metabolic Role of the Legume Endosperm: A Noninvasive Imaging Study

(2009) G. Melkus et al.   PLANT PHYSIOLOGY

ProteoWizard: open source software for rapid proteomics tools development

(2008) Darren Kessner et al.   BIOINFORMATICS

From intracellular signaling networks to cell death: the dual role of reactive oxygen species in seed physiology

(2008) Christophe Bailly et al.   COMPTES RENDUS BIOLOGIES

A sulphur deficiency-induced gene,sdi1, involved in the utilization of stored sulphate pools under sulphur-limiting conditions has potential as a diagnostic indicator of sulphur nutritional status

(2008) Jonathan R. Howarth et al.   PLANT BIOTECHNOLOGY JOURNAL

Dissecting the proteome of pea mature seeds reveals the phenotypic plasticity of seed protein composition

(2008) Michael Bourgeois et al.   PROTEOMICS