Longitudinal analysis of T-cell receptor repertoires reveals persistence of antigen-driven CD4+ and CD8+ T-cell clusters in systemic sclerosis

CMV-specific clones may lead to reduced TCR diversity and relapse in systemic sclerosis patients treated with AHSCT

(2020) Lucas C M Arruda et al.   RHEUMATOLOGY

A cell atlas of human thymic development defines T cell repertoire formation

(2020) Jong-Eun Park et al.   SCIENCE

OLGA: fast computation of generation probabilities of B- and T-cell receptor amino acid sequences and motifs

(2019) Zachary Sethna et al.   BIOINFORMATICS

Increased antibody levels to stage-specific Epstein–Barr virus antigens in systemic autoimmune diseases reveal a common pathology

(2019) Louise Sternbæk et al.   SCANDINAVIAN JOURNAL OF CLINICAL & LABORATORY INVESTIGATION

High frequency of shared clonotypes in human B cell receptor repertoires

(2019) Cinque Soto et al.   NATURE

T cell receptor β repertoires as novel diagnostic markers for systemic lupus erythematosus and rheumatoid arthritis

(2019) Xiao Liu et al.   ANNALS OF THE RHEUMATIC DISEASES

Longitudinal immunosequencing in healthy people reveals persistent T cell receptors rich in highly public receptors

(2019) Nathaniel D. Chu et al.   BMC IMMUNOLOGY

Characterization of T-Cell Receptor Repertoire in Patients with Rheumatoid Arthritis Receiving Biologic Therapies

(2019) Che-Mai Chang et al.   DISEASE MARKERS

Bystander activation and autoimmunity

(2019) Yovana Pacheco et al.   JOURNAL OF AUTOIMMUNITY

Detecting T cell receptors involved in immune responses from single repertoire snapshots

(2019) Mikhail V. Pogorelyy et al.   PLOS BIOLOGY

VDJdb in 2019: database extension, new analysis infrastructure and a T-cell receptor motif compendium

(2019) Dmitry V Bagaev et al.   NUCLEIC ACIDS RESEARCH

Patients withCD3Gmutations reveal a role for human CD3γ in Tregdiversity and suppressive function

(2018) Jared H. Rowe et al.   BLOOD

Memory CD4+ T cell receptor repertoire data mining as a tool for identifying cytomegalovirus serostatus

(2018) Nicolas De Neuter et al.   GENES AND IMMUNITY

Characterization of peripheral blood TCR repertoire in patients with ankylosing spondylitis by high-throughput sequencing

(2018) Jin-Huan Cui et al.   HUMAN IMMUNOLOGY

Cytomegalovirus Exposure in the Elderly Does Not Reduce CD8 T Cell Repertoire Diversity

(2018) Paul Lindau et al.   JOURNAL OF IMMUNOLOGY

Long-term immune reconstitution and T cell repertoire analysis after autologous hematopoietic stem cell transplantation in systemic sclerosis patients

(2017) Dominique Farge et al.   Journal of Hematology & Oncology

Quantifiable predictive features define epitope-specific T cell receptor repertoires

(2017) Pradyot Dash et al.   NATURE

Identifying specificity groups in the T cell receptor repertoire

(2017) Jacob Glanville et al.   NATURE

T cell receptor β-chains display abnormal shortening and repertoire sharing in type 1 diabetes

(2017) Iria Gomez-Tourino et al.   Nature Communications

Somatic mutations in clonally expanded cytotoxic T lymphocytes in patients with newly diagnosed rheumatoid arthritis

(2017) P. Savola et al.   Nature Communications

RTCR: a pipeline for complete and accurate recovery of T cell repertoires from high throughput sequencing data

(2016) Bram Gerritsen et al.   BIOINFORMATICS

Preferential Use of Public TCR during Autoimmune Encephalomyelitis

(2016) Yunqian Zhao et al.   JOURNAL OF IMMUNOLOGY

iNEXT: an R package for rarefaction and extrapolation of species diversity (Hill numbers)

(2016) T. C. Hsieh et al.   Methods in Ecology and Evolution

tcR: an R package for T cell receptor repertoire advanced data analysis

(2015) Vadim I. Nazarov et al.   BMC BIOINFORMATICS

αβ T cell receptors as predictors of health and disease

(2015) Meriem Attaf et al.   Cellular & Molecular Immunology

Longitudinal analysis of peripheral blood T cell receptor diversity in patients with systemic lupus erythematosus by next-generation sequencing

(2015) Dharma R Thapa et al.   ARTHRITIS RESEARCH & THERAPY

Diversity and clonal selection in the human T-cell repertoire

(2014) Q. Qi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

2013 classification criteria for systemic sclerosis: an American college of rheumatology/European league against rheumatism collaborative initiative

(2013) Frank van den Hoogen et al.   ANNALS OF THE RHEUMATIC DISEASES

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

Estimating the ratio of CD4+ to CD8+ T cells using high-throughput sequence data

(2013) Ryan Emerson et al.   JOURNAL OF IMMUNOLOGICAL METHODS

Preparing Unbiased T-Cell Receptor and Antibody cDNA Libraries for the Deep Next Generation Sequencing Profiling

(2013) Ilgar Z. Mamedov et al.   Frontiers in Immunology

Interleukin-13-producing CD8+ T cells mediate dermal fibrosis in patients with systemic sclerosis

(2012) Patrizia Fuschiotti et al.   ARTHRITIS AND RHEUMATISM

Tumor necrosis factor-costimulated T lymphocytes from patients with systemic sclerosis trigger collagen production in fibroblasts

(2012) Thomas Hügle et al.   ARTHRITIS AND RHEUMATISM

Molecular Mimicry as a Mechanism of Autoimmune Disease

(2011) Matthew F. Cusick et al.   CLINICAL REVIEWS IN ALLERGY & IMMUNOLOGY

Altered T-cell and regulatory cell repertoire in patients with diffuse cutaneous systemic sclerosis

(2011) G Papp et al.   SCANDINAVIAN JOURNAL OF RHEUMATOLOGY

Increased frequency of circulating Th22 in addition to Th17 and Th2 lymphocytes in systemic sclerosis: association with interstitial lung disease

(2011) Marie-Elise Truchetet et al.   ARTHRITIS RESEARCH & THERAPY

Bystander activation of CD4+T cells

(2010) Onur Boyman   EUROPEAN JOURNAL OF IMMUNOLOGY

Autoimmunity arising from bystander proliferation of T cells in an immune response model

(2010) N.J. Burroughs et al.   MATHEMATICAL AND COMPUTER MODELLING

Peripheral T cells from patients with early systemic sclerosis kill autologous fibroblasts in co-culture: is T-cell response aimed to play a protective role?

(2010) R. De Palma et al.   RHEUMATOLOGY

Overlap and Effective Size of the Human CD8+ T Cell Receptor Repertoire

(2010) H. S. Robins et al.   Science Translational Medicine

The Role of Infections in the Immunopathogensis of Systemic Sclerosis-Evidence from Serological Studies

(2009) Yoav Arnson et al.   Annals of the New York Academy of Sciences

Scleroderma

(2009) Armando Gabrielli et al.   NEW ENGLAND JOURNAL OF MEDICINE