Sperm Methylome Profiling Can Discern Fertility Levels in the Porcine Biomedical Model

MicroRNA expression profile analysis in sperm reveals hsa-mir-191 as an auspicious omen of in vitro fertilization

(2020) Hua Xu et al.   BMC GENOMICS

The Role of MicroRNAs in Mammalian Fertility: From Gametogenesis to Embryo Implantation

(2020) Dessie Salilew-Wondim et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The Transcriptome of Pig Spermatozoa, and Its Role in Fertility

(2020) Manuel Alvarez-Rodriguez et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Genome-Wide Association Study Reveals Candidate Genes for Litter Size Traits in Pelibuey Sheep

(2020) Wilber Hernández-Montiel et al.   Animals

Future diagnostics in male infertility: genomics, epigenetics, metabolomics and proteomics

(2020) Sarah C. Krzastek et al.   Translational Andrology and Urology

Murine germ cell-specific disruption of Ift172 causes defects in spermiogenesis and male fertility

(2020) Shiyang Zhang et al.   REPRODUCTION

Sperm DNA Integrity and Male Fertility in Farm Animals: A Review

(2020) Arumugam Kumaresan et al.   Frontiers in Veterinary Science

Ablation of TMEM126B protects against oxygen-glucose deprivation/reoxygenation-induced injuries of PC12 cells via maintaining mitochondrial anti-apoptotic functions

(2020) Lihong Wei et al.   ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS

Single-step genome-wide association study for social genetic effects and direct genetic effects on growth in Landrace pigs

(2020) Joon-Ki Hong et al.   Scientific Reports

Epigenetic mechanisms within the sperm epigenome and their diagnostic potential

(2020) Chad A. Pollard et al.   BEST PRACTICE & RESEARCH CLINICAL ENDOCRINOLOGY & METABOLISM

Diagnostics of DNA fragmentation in human spermatozoa: Are sperm chromatin structure analysis and sperm chromatin dispersion tests (SCD‐HaloSpermG2 ® ) comparable?

(2019) Susanne Liffner et al.   ANDROLOGIA

A RNA-Seq Analysis to Describe the Boar Sperm Transcriptome and Its Seasonal Changes

(2019) Marta Gòdia et al.   Frontiers in Genetics

Whole-genome re-sequencing association study for direct genetic effects and social genetic effects of six growth traits in Large White pigs

(2019) Pingxian Wu et al.   Scientific Reports

DNA methylation patterns vary in boar sperm cells with different levels of DNA fragmentation

(2019) Abdolrahman Khezri et al.   BMC GENOMICS

Weighted single-step GWAS identified candidate genes associated with semen traits in a Duroc boar population

(2019) Ning Gao et al.   BMC GENOMICS

Identifying candidate genes associated with sperm morphology abnormalities using weighted single-step GWAS in a Duroc boar population

(2019) Yunxiang Zhao et al.   THERIOGENOLOGY

Seminal Plasma Modifies the Transcriptional Pattern of the Endometrium and Advances Embryo Development in Pigs

(2019) Cristina A. Martinez et al.   Frontiers in Veterinary Science

Effects of season on boar semen parameters and antioxidant enzymes in the south subtropical region in Brazil

(2018) L. E. Argenti et al.   ANDROLOGIA

Identification of genome regions determining semen quality in Holstein-Friesian bulls using information theory

(2018) Alicja Borowska et al.   ANIMAL REPRODUCTION SCIENCE

Identification of genomic variants causing sperm abnormalities and reduced male fertility

(2018) Jeremy F. Taylor et al.   ANIMAL REPRODUCTION SCIENCE

Lmx1a is required for the development of the ovarian stem cell niche inDrosophila

(2018) Andrew W. Allbee et al.   DEVELOPMENT

RAPGEF5 Regulates Nuclear Translocation of β-Catenin

(2018) John N. Griffin et al.   DEVELOPMENTAL CELL

New In-Depth Analytical Approach of the Porcine Seminal Plasma Proteome Reveals Potential Fertility Biomarkers

(2018) Cristina Pérez-Patiño et al.   JOURNAL OF PROTEOME RESEARCH

miR-26a suppresses autophagy in swine Sertoli cells by targeting ULK2

(2018) M Ran et al.   REPRODUCTION IN DOMESTIC ANIMALS

DNA methylation profiles in red blood cells of adult hens correlate with their rearing conditions

(2017) Fábio Pértille et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Swine models, genomic tools and services to enhance our understanding of human health and diseases

(2017) Eric M Walters et al.   LAB ANIMAL

DISMISS: detection of stranded methylation in MeDIP-Seq data

(2016) Umar Niazi et al.   BMC BIOINFORMATICS

Genome engineering uncovers 54 evolutionarily conserved and testis-enriched genes that are not required for male fertility in mice

(2016) Haruhiko Miyata et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High-throughput and Cost-effective Chicken Genotyping Using Next-Generation Sequencing

(2016) Fábio Pértille et al.   Scientific Reports

ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization

(2015) Guangchuang Yu et al.   BIOINFORMATICS

Reduced Fertility and Altered Epididymal and Sperm Integrity in Mice Lacking ADAM71

(2015) Heejin Choi et al.   BIOLOGY OF REPRODUCTION

Gene expression pattern of KIFC3 during spermatogenesis of the skink Eumeces chinensis

(2015) Jian-Rao Hu et al.   GENE

Boar Differences In Artificial Insemination Outcomes: Can They Be Minimized?

(2015) J Roca et al.   REPRODUCTION IN DOMESTIC ANIMALS

The alternative role of DNA methylation in splicing regulation

(2015) Galit Lev Maor et al.   TRENDS IN GENETICS

Association between an alternative promoter polymorphism and sperm deformity rate is due to modulation of the expression ofKATNAL1transcripts in Chinese Holstein bulls

(2014) X. Zhang et al.   ANIMAL GENETICS

Sperm DNA Methylation Analysis in Swine Reveals Conserved and Species-Specific Methylation Patterns and Highlights an Altered Methylation at the GNAS Locus in Infertile Boars1

(2014) Annabelle Congras et al.   BIOLOGY OF REPRODUCTION

Limitations of semen analysis as a test of male fertility and anticipated needs from newer tests

(2014) Christina Wang et al.   FERTILITY AND STERILITY

Lack of association of KATNAL1 gene sequence variants and azoospermia in humans

(2014) Anastasia M. Fedick et al.   JOURNAL OF ASSISTED REPRODUCTION AND GENETICS

TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline

(2014) Jeffrey C. Glaubitz et al.   PLoS One

Paternally induced transgenerational inheritance of susceptibility to diabetes in mammals

(2014) Yanchang Wei et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Medical Management of Male Infertility in the Absence of a Specific Etiology

(2014) Ahmet Gudeloglu et al.   SEMINARS IN REPRODUCTIVE MEDICINE

A Nonsense Mutation in TMEM95 Encoding a Nondescript Transmembrane Protein Causes Idiopathic Male Subfertility in Cattle

(2014) Hubert Pausch et al.   PLoS Genetics

Sperm epigenomics: challenges and opportunities

(2014) Eduard Casas et al.   Frontiers in Genetics

MEDIPS: genome-wide differential coverage analysis of sequencing data derived from DNA enrichment experiments

(2013) Matthias Lienhard et al.   BIOINFORMATICS

Signaling in Sperm: Toward a Molecular Understanding of the Acquisition of Sperm Motility in the Mouse Epididymis1

(2013) Melissa L. Vadnais et al.   BIOLOGY OF REPRODUCTION

Loss of R2D2 Proteins ROPN1 and ROPN1L Causes Defects in Murine Sperm Motility, Phosphorylation, and Fibrous Sheath Integrity1

(2013) Sarah E. Fiedler et al.   BIOLOGY OF REPRODUCTION

Genome-wide Association Study Identifies Candidate Genes for Male Fertility Traits in Humans

(2012) Gülüm Kosova et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Identifying ChIP-seq enrichment using MACS

(2012) Jianxing Feng et al.   Nature Protocols

Development of High-Density Genetic Maps for Barley and Wheat Using a Novel Two-Enzyme Genotyping-by-Sequencing Approach

(2012) Jesse A. Poland et al.   PLoS One

Field Data Analysis of Boar Semen Quality

(2012) MLWJ Broekhuijse et al.   REPRODUCTION IN DOMESTIC ANIMALS

The value of microscopic semen motility assessment at collection for a commercial artificial insemination center, a retrospective study on factors explaining variation in pig fertility

(2012) M.L.W.J. Broekhuijse et al.   THERIOGENOLOGY

KATNAL1 Regulation of Sertoli Cell Microtubule Dynamics Is Essential for Spermiogenesis and Male Fertility

(2012) Lee B. Smith et al.   PLoS Genetics

Seminal Plasma Proteins: What Role Do They Play?

(2011) Heriberto Rodríguez-Martínez et al.   AMERICAN JOURNAL OF REPRODUCTIVE IMMUNOLOGY

CpG islands and the regulation of transcription

(2011) A. M. Deaton et al.   GENES & DEVELOPMENT

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Stacks : Building and Genotyping Loci De Novo From Short-Read Sequences

(2011) Julian M. Catchen et al.   G3-Genes Genomes Genetics

Chromatin density and splicing destiny: on the cross-talk between chromatin structure and splicing

(2010) Schraga Schwartz et al.   EMBO JOURNAL

Computational analysis of genome-wide DNA methylation during the differentiation of human embryonic stem cells along the endodermal lineage

(2010) L. Chavez et al.   GENOME RESEARCH

Identification of heat shock protein 5, calnexin and integral membrane protein 2B as Adam7-interacting membrane proteins in mouse sperm

(2010) Cecil Han et al.   JOURNAL OF CELLULAR PHYSIOLOGY

World Health Organization reference values for human semen characteristics*‡

(2009) Trevor G. Cooper et al.   HUMAN REPRODUCTION UPDATE

DNA methylation patterns at theIGF2-H19locus in sperm of Swiss Landrace and Swiss Large White boars

(2009) Petra Giannini et al.   JOURNAL OF ANIMAL BREEDING AND GENETICS

Themis controls thymocyte selection through regulation of T cell antigen receptor–mediated signaling

(2009) Guo Fu et al.   NATURE IMMUNOLOGY

Genome-scale DNA methylation maps of pluripotent and differentiated cells

(2008) Alexander Meissner et al.   NATURE

A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis

(2008) Thomas A Down et al.   NATURE BIOTECHNOLOGY

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY