Summary of the Available Molecular Methods for Detection of SARS-CoV-2 during the Ongoing Pandemic

Detection of 2019 novel coronavirus (2019-nCoV) by real-time RT-PCR

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Transmission dynamics and evolutionary history of 2019‐nCoV

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Cross‐species transmission of the newly identified coronavirus 2019‐nCoV

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The first two cases of 2019‐nCoV in Italy: Where they come from?

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Genomic characterisation and epidemiology of 2019 novel coronavirus: implications for virus origins and receptor binding

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A new coronavirus associated with human respiratory disease in China

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First Case of 2019 Novel Coronavirus in the United States

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The global spread of 2019-nCoV: a molecular evolutionary analysis

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The species Severe acute respiratory syndrome-related coronavirus: classifying 2019-nCoV and naming it SARS-CoV-2

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Recent advances and perspectives of nucleic acid detection for coronavirus

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Whole genome and phylogenetic analysis of two SARS-CoV-2 strains isolated in Italy in January and February 2020: additional clues on multiple introductions and further circulation in Europe

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A doubt of multiple introduction of SARS-CoV-2 in Italy: A preliminary overview

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Identifying SARS-CoV-2 related coronaviruses in Malayan pangolins

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Virological assessment of hospitalized patients with COVID-2019

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Overcoming the bottleneck to widespread testing: A rapid review of nucleic acid testing approaches for COVID-19 detection

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Introductions and early spread of SARS-CoV-2 in the New York City area

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Viral RNA load as determined by cell culture as a management tool for discharge of SARS-CoV-2 patients from infectious disease wards

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Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020

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Multiple assays in a real-time RT-PCR SARS-CoV-2 panel can mitigate the risk of loss of sensitivity by new genomic variants during the COVID-19 outbreak

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Use of Whole Genome Sequencing Data for a First in Silico Specificity Evaluation of the RT-qPCR Assays Used for SARS-CoV-2 Detection

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Geographic and Genomic Distribution of SARS-CoV-2 Mutations

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Presence of mismatches between diagnostic PCR assays and coronavirus SARS-CoV-2 genome

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Analytical sensitivity and efficiency comparisons of SARS-CoV-2 RT–qPCR primer–probe sets

(2020) Chantal B. F. Vogels et al.   Nature Microbiology

COVID-19 Infection Diagnosis: Potential Impact of Isothermal Amplification Technology to Reduce Community Transmission of SARS-CoV-2

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Emergence of genomic diversity and recurrent mutations in SARS-CoV-2

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Molecular analysis of several in-house rRT-PCR protocols for SARS-CoV-2 detection in the context of genetic variability of the virus in Colombia

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Assessing oligonucleotide designs from early lab developed PCR diagnostic tests for SARS-CoV-2 using the PCR_strainer pipeline

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Temporal signal and the phylodynamic threshold of SARS-CoV-2

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No evidence for increased transmissibility from recurrent mutations in SARS-CoV-2

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Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)

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Nextstrain: real-time tracking of pathogen evolution

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Origin and evolution of pathogenic coronaviruses

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Continuous and Discontinuous RNA Synthesis in Coronaviruses

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