Role of germ-free animal models in understanding interactions of gut microbiota to host and environmental health: A special reference to zebrafish

Determining macrophage versus neutrophil contributions to innate immunity using larval zebrafish

(2020) Emily E. Rosowski   Disease Models & Mechanisms

The Epigenetic Connection Between the Gut Microbiome in Obesity and Diabetes

(2020) Manvi Sharma et al.   Frontiers in Genetics

Diet, inflammation and the gut microbiome: Mechanisms for obesity-associated cognitive impairment

(2020) Sarah-Jane Leigh et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE

Gut microbiome and its role in obesity and insulin resistance

(2019) Clare J. Lee et al.   Annals of the New York Academy of Sciences

Gut microbiota of aquatic organisms: A key endpoint for ecotoxicological studies

(2019) Lauris Evariste et al.   ENVIRONMENTAL POLLUTION

Connection between gut microbiome and the development of obesity

(2019) Cuiting Zhi et al.   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

The Responses of Germ-Free Zebrafish (Danio rerio) to Varying Bacterial Concentrations, Colonization Time Points, and Exposure Duration

(2019) Fang Tan et al.   Frontiers in Microbiology

Zebrafish in Inflammasome Research

(2019) Gabriel Forn-Cuní et al.   Cells

The zebrafish as a model for gastrointestinal tract–microbe interactions

(2019) Erika M. Flores et al.   CELLULAR MICROBIOLOGY

Germ-free animal experiments in the gut microbiota studies

(2019) Tayfun Uzbay   CURRENT OPINION IN PHARMACOLOGY

The Case for Modeling Human Infection in Zebrafish

(2019) Margarida C. Gomes et al.   TRENDS IN MICROBIOLOGY

Connecting the immune system, systemic chronic inflammation and the gut microbiome: The role of sex

(2018) Lisa Rizzetto et al.   JOURNAL OF AUTOIMMUNITY

Development and evaluation of the bacterial fate and transport module for the Agricultural Policy/Environmental eXtender (APEX) model

(2018) Eun-Mi Hong et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Zebrafish Axenic Larvae Colonization with Human Intestinal Microbiota

(2018) Nerea Arias-Jayo et al.   Zebrafish

Involvement of gut microbiome in human health and disease: brief overview, knowledge gaps and research opportunities

(2018) Dachao Liang et al.   Gut Pathogens

The Presence or Absence of Intestinal Microbiota Affects Lipid Deposition and Related Genes Expression in Zebrafish (Danio rerio)

(2018) Yi Sheng et al.   Frontiers in Microbiology

Sex dependent effects of silver nanoparticles on the zebrafish gut microbiota

(2018) Yanbo Ma et al.   Environmental Science-Nano

Origination, change, and modulation of geriatric disease-related gut microbiota during life

(2018) Muhammad Shahid Riaz Rajoka et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Glucose metabolism by Escherichia coli inhibits Vibrio cholerae intestinal colonization of zebrafish

(2018) Dhrubajyoti Nag et al.   INFECTION AND IMMUNITY

The gut microbiome in obesity

(2018) Ching-Hung Tseng et al.   JOURNAL OF THE FORMOSAN MEDICAL ASSOCIATION

Gut Microbiome in Obesity, Metabolic Syndrome, and Diabetes

(2018) Xinpu Chen et al.   Current Diabetes Reports

Obesity, diabetes, and the gut microbiome: an updated review

(2018) Tahli Singer-Englar et al.   Expert Review of Gastroenterology & Hepatology

The gut microbiome of Mexican children affected by obesity

(2018) Otoniel Maya-Lucas et al.   ANAEROBE

Effects of environmental pollutants on gut microbiota

(2017) Yuanxiang Jin et al.   ENVIRONMENTAL POLLUTION

Metagenomics analysis of gut microbiota and immune modulation in zebrafish ( Danio rerio ) fed chitosan silver nanocomposites

(2017) R.M.C. Udayangani et al.   FISH & SHELLFISH IMMUNOLOGY

Pathogen invasion changes the intestinal microbiota composition and induces innate immune responses in the zebrafish intestine

(2017) Hui-Ting Yang et al.   FISH & SHELLFISH IMMUNOLOGY

Understanding and Preventing the Global Increase of Inflammatory Bowel Disease

(2017) Gilaad G. Kaplan et al.   GASTROENTEROLOGY

The Growth-Promoting Effect of Dietary Nucleotides in Fish Is Associated with an Intestinal Microbiota-Mediated Reduction in Energy Expenditure

(2017) Xiaoze Guo et al.   JOURNAL OF NUTRITION

Gut biofilm forming bacteria in inflammatory bowel disease

(2017) Ankita Srivastava et al.   MICROBIAL PATHOGENESIS

Macrophage–Microbe Interactions: Lessons from the Zebrafish Model

(2017) Nagisa Yoshida et al.   Frontiers in Immunology

Zebrafish ( Danio rerio ) as a Vertebrate Model Host To Study Colonization, Pathogenesis, and Transmission of Foodborne Escherichia coli O157

(2017) Daniel H. Stones et al.   mSphere

Bacterial nutrient foraging in a mouse model of enteral nutrient deprivation: insight into the gut origin of sepsis

(2016) Matthew W. Ralls et al.   AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY

Microbial modulation of behavior and stress responses in zebrafish larvae

(2016) Daniel J. Davis et al.   BEHAVIOURAL BRAIN RESEARCH

The relationship between the immune system and oral manifestations of inflammatory bowel disease: a review

(2016) Miroslav Vasovic et al.   Central European Journal of Immunology

Gut Microbiota and Obesity

(2016) Chiara Valsecchi et al.   JOURNAL OF CLINICAL GASTROENTEROLOGY

Gut microbiome in health and disease: Linking the microbiome–gut–brain axis and environmental factors in the pathogenesis of systemic and neurodegenerative diseases

(2016) Shivani Ghaisas et al.   PHARMACOLOGY & THERAPEUTICS

Probiotic treatment reduces appetite and glucose level in the zebrafish model

(2016) Silvia Falcinelli et al.   Scientific Reports

Generation of Germ-Free Ciona intestinalis for Studies of Gut-Microbe Interactions

(2016) Brittany A. Leigh et al.   Frontiers in Microbiology

Gnotobiotic Rodents: An In Vivo Model for the Study of Microbe–Microbe Interactions

(2016) Rebeca Martín et al.   Frontiers in Microbiology

The gut microbiota: a major player in the toxicity of environmental pollutants?

(2016) Sandrine P Claus et al.   npj Biofilms and Microbiomes

Zebrafish gut colonization by mCherry-labelled lactic acid bacteria

(2015) Pasquale Russo et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Unraveling the environmental and genetic interactions in atherosclerosis: Central role of the gut microbiota

(2015) Elin Org et al.   ATHEROSCLEROSIS

The gut microbiota and host health: a new clinical frontier

(2015) Julian R Marchesi et al.   GUT

Human Microbiota-Associated Swine: Current Progress and Future Opportunities

(2015) M. Wang et al.   ILAR JOURNAL

The composition of the zebrafish intestinal microbial community varies across development

(2015) W Zac Stephens et al.   ISME Journal

Use of Germ-Free Animal Models in Microbiota-Related Research

(2015) Maha Al-Asmakh et al.   JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY

Role of the normal gut microbiota

(2015) Sai Manasa Jandhyala   WORLD JOURNAL OF GASTROENTEROLOGY

Use of Gnotobiotic Zebrafish to Study Vibrio anguillarum Pathogenicity

(2015) Usua Oyarbide et al.   Zebrafish

Identification of Population Bottlenecks and Colonization Factors during Assembly of Bacterial Communities within the Zebrafish Intestine

(2015) W. Zac Stephens et al.   mBio

Immersion infection of germ-free zebrafish with Listeria monocytogenes induces transient expression of innate immune response genes

(2015) Ying Shan et al.   Frontiers in Microbiology

Rapidly expanding knowledge on the role of the gut microbiome in health and disease

(2014) M.C. Cénit et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE

Microbiome and Colorectal Carcinoma

(2014) Helena Tlaskalova-Hogenova et al.   CANCER JOURNAL

Macrophage-pathogen interactions in infectious diseases: new therapeutic insights from the zebrafish host model

(2014) V. Torraca et al.   Disease Models & Mechanisms

Zebrafish as a model for understanding the evolution of the vertebrate immune system and human primary immunodeficiency

(2014) Norimasa Iwanami   EXPERIMENTAL HEMATOLOGY

Role of the Microbiome in Energy Regulation and Metabolism

(2014) Max Nieuwdorp et al.   GASTROENTEROLOGY

TRIF Signaling Drives Homeostatic Intestinal Epithelial Antimicrobial Peptide Expression

(2014) Silvia Stockinger et al.   JOURNAL OF IMMUNOLOGY

Intestinal microbiota pathogenesis and fecal microbiota transplantation for inflammatory bowel disease

(2014) Zi-Kai Wang   WORLD JOURNAL OF GASTROENTEROLOGY

Spatial and Temporal Features of the Growth of a Bacterial Species Colonizing the Zebrafish Gut

(2014) Matthew Jemielita et al.   mBio

Microbial fingerprinting detects intestinal microbiota dysbiosis in Zebrafish models with chemically-induced enterocolitis

(2013) Qi He et al.   BMC MICROBIOLOGY

Zebrafish as a model system to study toxicology

(2013) Yu-Jie Dai et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

Mucosal innate immune cells regulate both gut homeostasis and intestinal inflammation

(2013) Yosuke Kurashima et al.   EUROPEAN JOURNAL OF IMMUNOLOGY

Effects of probiotic administration on zebrafish development and reproduction

(2013) O. Carnevali et al.   GENERAL AND COMPARATIVE ENDOCRINOLOGY

Zebrafish as a Novel Vertebrate Model To Dissect Enterococcal Pathogenesis

(2013) Tomasz K. Prajsnar et al.   INFECTION AND IMMUNITY

T Lymphocyte-Dependent and -Independent Regulation of Cxcl8 Expression in Zebrafish Intestines

(2013) S. Brugman et al.   JOURNAL OF IMMUNOLOGY

Intestinal Microbial Diversity and Perioperative Complications

(2013) Matthew W. Ralls et al.   JOURNAL OF PARENTERAL AND ENTERAL NUTRITION

The microbiome: stress, health and disease

(2013) Rachel D. Moloney et al.   MAMMALIAN GENOME

The zebrafish reference genome sequence and its relationship to the human genome

(2013) Kerstin Howe et al.   NATURE

Colonizing the Embryonic Zebrafish Gut with Anaerobic Bacteria Derived from the Human Gastrointestinal Tract

(2013) Michael C. Toh et al.   Zebrafish

Transient inflammatory-like state and microbial dysbiosis are pivotal in establishment of mucosal homeostasis during colonisation of germ-free mice

(2013) S. El Aidy et al.   Beneficial Microbes

Gut Microbes Make for Fattier Fish

(2012) Rachel N. Carmody et al.   Cell Host & Microbe

Microbiota Regulate Intestinal Absorption and Metabolism of Fatty Acids in the Zebrafish

(2012) Ivana Semova et al.   Cell Host & Microbe

Innate immunity in the small intestine

(2012) Rebeca Santaolalla et al.   CURRENT OPINION IN GASTROENTEROLOGY

A model 450 million years in the making: zebrafish and vertebrate immunity

(2012) S. A. Renshaw et al.   Disease Models & Mechanisms

Interleukin 13 and its role in gut defence and inflammation

(2012) Peter Mannon et al.   GUT

Gut Microbiota, Diet, and Heart Disease

(2012) Julia M.W. Wong et al.   JOURNAL OF AOAC INTERNATIONAL

Environmental and ecological factors that shape the gut bacterial communities of fish: a meta-analysis

(2012) KAREN E. SULLAM et al.   MOLECULAR ECOLOGY

Intestinal Inflammation Targets Cancer-Inducing Activity of the Microbiota

(2012) J. C. Arthur et al.   SCIENCE

A New Zebrafish Model of Oro-Intestinal Pathogen Colonization Reveals a Key Role for Adhesion in Protection by Probiotic Bacteria

(2012) Olaya Rendueles et al.   PLoS Pathogens

Infection of Zebrafish Embryos with Intracellular Bacterial Pathogens

(2012) Erica L. Benard et al.   Jove-Journal of Visualized Experiments

Toll-Like Receptor–Gut Microbiota Interactions: Perturb at Your Own Risk!

(2011) Frederic A. Carvalho et al.   Annual Review of Physiology

Evidence for a core gut microbiota in the zebrafish

(2011) Guus Roeselers et al.   ISME Journal

Enterotypes of the human gut microbiome

(2011) Manimozhiyan Arumugam et al.   NATURE

The human gut microbiome: are we our enterotypes?

(2011) Roland J. Siezen et al.   Microbial Biotechnology

Gut Microbes: From Bugs to Drugs

(2010) Fergus Shanahan   AMERICAN JOURNAL OF GASTROENTEROLOGY

Role of gastrointestinal microbiota in fish

(2010) Sukanta K Nayak   AQUACULTURE RESEARCH

mpeg1 promoter transgenes direct macrophage-lineage expression in zebrafish

(2010) F. Ellett et al.   BLOOD

Lack of Commensal Flora in Helicobacter pylori–Infected INS-GAS Mice Reduces Gastritis and Delays Intraepithelial Neoplasia

(2010) Jennifer L. Lofgren et al.   GASTROENTEROLOGY

Creating and characterizing communities of human gut microbes in gnotobiotic mice

(2010) Jeremiah J Faith et al.   ISME Journal

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

Targeting the Human Microbiome With Antibiotics, Probiotics, and Prebiotics: Gastroenterology Enters the Metagenomics Era

(2009) Geoffrey A. Preidis et al.   GASTROENTEROLOGY

Inescapable Need for Neutrophils as Mediators of Cellular Innate Immunity to Acute Pseudomonas aeruginosa Pneumonia

(2009) A. Y. Koh et al.   INFECTION AND IMMUNITY

Zebrafish embryos as models for embryotoxic and teratological effects of chemicals

(2009) Lixin Yang et al.   REPRODUCTIVE TOXICOLOGY

Zebrafish as a model for infectious disease and immune function

(2008) Con Sullivan et al.   FISH & SHELLFISH IMMUNOLOGY

Zebrafish as a Cancer Model

(2008) H. Feitsma et al.   MOLECULAR CANCER RESEARCH

Innate immunity and intestinal microbiota in the development of Type 1 diabetes

(2008) Li Wen et al.   NATURE

Methods for generating and colonizing gnotobiotic zebrafish

(2008) Linh N Pham et al.   Nature Protocols

Symbiotic gut microbes modulate human metabolic phenotypes

(2008) M. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA