De novo transcriptome in roots of switchgrass (Panicum virgatum L.) reveals gene expression dynamic and act network under alkaline salt stress

Alfalfa MsCBL4 enhances calcium metabolism but not sodium transport in transgenic tobacco under salt and saline–alkali stress

(2020) Yimin An et al.   PLANT CELL REPORTS

The tolerance to saline–alkaline stress was dependent on the roots in wheat

(2020) Kehao Zhang et al.   PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS

Genetic analysis of germinating ability under alkaline and neutral salt stress by a high-density bin genetic map in rice

(2020) Xin Luo et al.   EUPHYTICA

Mutual interplay of Ca2+ and ROS signaling in plant immune response

(2019) Matthew J. Marcec et al.   PLANT SCIENCE

Circadian gating of dark‐induced increases in chloroplast‐ and cytosolic‐free calcium in Arabidopsis

(2019) María Carmen Martí Ruiz et al.   NEW PHYTOLOGIST

Characterization of Na+ exclusion mechanism in rice under saline-alkaline stress conditions

(2019) Sumana Chuamnakthong et al.   PLANT SCIENCE

Transcriptomic analysis reveals vacuolar Na+ (K+)/H+ antiporter gene contributing to growth, development, and defense in switchgrass (Panicum virgatum L.)

(2018) Yanhua Huang et al.   BMC PLANT BIOLOGY

Reciprocal Regulation of the TOR Kinase and ABA Receptor Balances Plant Growth and Stress Response

(2018) Pengcheng Wang et al.   MOLECULAR CELL

Abiotic stress: Interplay between ROS, hormones and MAPKs

(2017) Vaseem Raja et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Elucidating the molecular mechanisms mediating plant salt-stress responses

(2017) Yongqing Yang et al.   NEW PHYTOLOGIST

Genome-wide identification and characterization of NB-ARC resistant genes in wheat (Triticum aestivum L.) and their expression during leaf rust infection

(2017) Saket Chandra et al.   PLANT CELL REPORTS

Advances on plant-pathogen interactions from molecular toward systems biology perspectives

(2017) Rémi Peyraud et al.   PLANT JOURNAL

Root Damage under Alkaline Stress Is Associated with Reactive Oxygen Species Accumulation in Rice (Oryza sativa L.)

(2017) Hui Zhang et al.   Frontiers in Plant Science

A novel Glycine soja homeodomain-leucine zipper (HD-Zip) I gene, Gshdz4, positively regulates bicarbonate tolerance and responds to osmotic stress in Arabidopsis

(2016) Lei Cao et al.   BMC PLANT BIOLOGY

Overexpression of vacuolar proton pump ATPase (V-H+-ATPase) subunits B, C and H confers tolerance to salt and saline-alkali stresses in transgenic alfalfa (Medicago sativa L.)

(2016) Fa-wei WANG et al.   Journal of Integrative Agriculture

Transcriptome profiling of the salt-stress response in Triticum aestivum cv. Kharchia Local

(2016) Etika Goyal et al.   Scientific Reports

Determining effects of sodicity and salinity on switchgrass and prairie cordgrass germination and plant growth

(2015) Eric K. Anderson et al.   INDUSTRIAL CROPS AND PRODUCTS

Overexpression of GmERF5, a new member of the soybean EAR motif-containing ERF transcription factor, enhances resistance to Phytophthora sojae in soybean

(2015) Lidong Dong et al.   JOURNAL OF EXPERIMENTAL BOTANY

Increased glutathione contributes to stress tolerance and global translational changes in Arabidopsis

(2015) Mei-Chun Cheng et al.   PLANT JOURNAL

The Rice High-Affinity Potassium Transporter1;1 Is Involved in Salt Tolerance and Regulated by an MYB-Type Transcription Factor

(2015) Rong Wang et al.   PLANT PHYSIOLOGY

Physiological Evaluation of Alkali-Salt Tolerance of Thirty Switchgrass (Panicum virgatum) Lines

(2015) Guofu Hu et al.   PLoS One

Proteomic and Biochemical Analyses Show a Functional Network of Proteins Involved in Antioxidant Defense of the Arabidopsis anp2anp3 Double Mutant

(2014) Tomáš Takáč et al.   JOURNAL OF PROTEOME RESEARCH

Arabidopsis AtERF71/HRE2 functions as transcriptional activator via cis-acting GCC box or DRE/CRT element and is involved in root development through regulation of root cell expansion

(2014) Sun-Young Lee et al.   PLANT CELL REPORTS

Selection and Validation of Reference Genes for Gene Expression Analysis in Switchgrass (Panicum virgatum) Using Quantitative Real-Time RT-PCR

(2014) Jacinta Gimeno et al.   PLoS One

Plant salt-tolerance mechanisms

(2014) Ulrich Deinlein et al.   TRENDS IN PLANT SCIENCE

Standardization of Switchgrass Sample Collection for Cell Wall and Biomass Trait Analysis

(2013) C. Frank Hardin et al.   BioEnergy Research

Advances in biotechnology and genomics of switchgrass

(2013) Madhugiri Nageswara-Rao et al.   Biotechnology for Biofuels

A comparison of hydroponic and soil-based screening methods to identify salt tolerance in the field in barley

(2012) Ehsan Tavakkoli et al.   JOURNAL OF EXPERIMENTAL BOTANY

Molecular characterization of two ethylene response factor genes in sweetpotato that respond to stress and activate the expression of defense genes in tobacco leaves

(2012) Yun-Hee Kim et al.   JOURNAL OF PLANT PHYSIOLOGY

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Functional characterization of the switchgrass (Panicum virgatum) R2R3-MYB transcription factor PvMYB4 for improvement of lignocellulosic feedstocks

(2011) Hui Shen et al.   NEW PHYTOLOGIST

KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases

(2011) Chen Xie et al.   NUCLEIC ACIDS RESEARCH

Expression Profiling of Cassava Storage Roots Reveals an Active Process of Glycolysis/GluconeogenesisF

(2010) Jun Yang et al.   Journal of Integrative Plant Biology

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

The Ca2+-dependent protein kinase CPK3 is required for MAPK-independent salt-stress acclimation in Arabidopsis

(2010) Norbert Mehlmer et al.   PLANT JOURNAL

Overexpression of the soybean GmERF3 gene, an AP2/ERF type transcription factor for increased tolerances to salt, drought, and diseases in transgenic tobacco

(2009) G. Zhang et al.   JOURNAL OF EXPERIMENTAL BOTANY

The CBL-CIPK Ca2+-decoding signaling network: function and perspectives

(2009) Stefan Weinl et al.   NEW PHYTOLOGIST

Reactive oxygen species homeostasis and signalling during drought and salinity stresses

(2009) GAD MILLER et al.   PLANT CELL AND ENVIRONMENT

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Modulation of growth, photosynthetic capacity and water relations in salt stressed wheat plants by exogenously applied 24-epibrassinolide

(2008) Qasim Ali et al.   PLANT GROWTH REGULATION

An Abscisic Acid-Induced Protein, HVA22, Inhibits Gibberellin-Mediated Programmed Cell Death in Cereal Aleurone Cells

(2008) W.-J. Guo et al.   PLANT PHYSIOLOGY