4.7 Article

Brain DNA Methylation Patterns in CLDN5 Associated With Cognitive Decline

Journal

BIOLOGICAL PSYCHIATRY
Volume 91, Issue 4, Pages 389-398

Publisher

ELSEVIER SCIENCE INC
DOI: 10.1016/j.biopsych.2021.01.015

Keywords

-

Ask authors/readers for more resources

The study found that differential methylation of the CLDN5 gene is associated with changes in cognitive trajectory beyond traditional Alzheimer's disease pathologies. The association between CLDN5 methylation and cognitive decline remains significant even in participants without pathological signs, indicating an early role for CLDN5 and blood-brain barrier dysfunction in cognitive decline and Alzheimer's disease.
BACKGROUND: Cognitive trajectory varies widely and can distinguish people who develop dementia from people who remain cognitively normal. Variation in cognitive trajectory is only partially explained by traditional neuropathologies. We sought to identify novel genes associated with cognitive trajectory using DNA methylation profiles from human postmortem brain. METHODS: We performed a brain epigenome-wide association study of cognitive trajectory in 636 participants from the ROS (Religious Orders Study) and MAP (Rush Memory and Aging Project) using DNA methylation profiles of the dorsolateral prefrontal cortex. To maximize our power to detect epigenetic associations, we used the recently developed Gene Association with Multiple Traits test to analyze the 5 measured cognitive domains simultaneously. RESULTS: We found an epigenome-wide association for differential methylation of sites in the CLDN5 locus and cognitive trajectory (p = 9.96 x 10-7) that was robust to adjustment for cell type proportions (p = 8.52 x 10-7). This association was primarily driven by association with declines in episodic (p = 4.65 x 10-6) and working (p = 2.54 x 10-7) memory. This association between methylation in CLDN5 and cognitive decline was significant even in participants with no or little signs of amyloid-b and neurofibrillary tangle pathology. CONCLUSIONS: Differential methylation of CLDN5, a gene that encodes an important protein of the blood-brain barrier, is associated with cognitive trajectory beyond traditional Alzheimer's disease pathologies. The association between CLDN5 methylation and cognitive trajectory in people with low pathology suggests an early role for CLDN5 and blood-brain barrier dysfunction in cognitive decline and Alzheimer's disease.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.7
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Geriatrics & Gerontology

Important Correlates of Purpose in Life Identified Through a Machine Learning Approach

Zhen Mei, Adriana Lori, Selina M. Vattathil, Patricia A. Boyle, Bekh Bradley, Peng Li, David A. Bennett, Thomas S. Wingo, Aliza P. Wingo

Summary: This study utilized a machine learning approach to identify important correlates of purpose in life, finding that factors such as loneliness, harm avoidance, older age, and depressive symptoms were associated with lower purpose in life, while perceived social support, more social activities, more years of education, and higher income were associated with greater purpose in life.

AMERICAN JOURNAL OF GERIATRIC PSYCHIATRY (2021)

Article Genetics & Heredity

Genetic control of the human brain proteome

Chloe Robins, Yue Liu, Wen Fan, Duc M. Duong, Jacob Meigs, Nadia Harerimana, Ekaterina S. Gerasimov, Eric B. Dammer, David J. Cutler, Thomas G. Beach, Eric M. Reiman, Philip L. De Jager, David A. Bennett, James J. Lah, Aliza P. Wingo, Allan Levey, Nicholas T. Seyfried, Thomas S. Wingo

Summary: The study generated an online brain pQTL resource for 7,376 proteins by analyzing genetic and proteomic data from the dorsolateral prefrontal cortex of 330 older adults. The identified pQTLs tend to be non-synonymous variations, over-represented among brain disease-associated variants, and show good replication in an independent brain dataset. Comparison with brain eQTLs revealed that most pQTLs are also eQTLs, suggesting lower pQTL mapping power and greater evolutionary constraint on protein abundance.

AMERICAN JOURNAL OF HUMAN GENETICS (2021)

Article Genetics & Heredity

Integrating human brain proteomes with genome-wide association data implicates new proteins in Alzheimer's disease pathogenesis

Aliza P. Wingo, Yue Liu, Ekaterina S. Gerasimov, Jake Gockley, Benjamin A. Logsdon, Duc M. Duong, Eric B. Dammer, Chloe Robins, Thomas G. Beach, Eric M. Reiman, Michael P. Epstein, Philip L. De Jager, James J. Lah, David A. Bennett, Nicholas T. Seyfried, Allan I. Levey, Thomas S. Wingo

Summary: This study identified 11 genes that may play a role in Alzheimer's disease (AD) by affecting brain protein abundance, through a proteome-wide association study. Eight of these genes are new AD risk genes not identified before by AD GWAS, providing new insights into AD pathogenesis. This research offers promising targets for further mechanistic and therapeutic studies on AD.

NATURE GENETICS (2021)

Article Neurosciences

Brain proteome-wide association study implicates novel proteins in depression pathogenesis

Thomas S. Wingo, Yue Liu, Ekaterina S. Gerasimov, Jake Gockley, Benjamin A. Logsdon, Duc M. Duong, Eric B. Dammer, Adriana Lori, Paul J. Kim, Kerry J. Ressler, Thomas G. Beach, Eric M. Reiman, Michael P. Epstein, Philip L. De Jager, James J. Lah, David A. Bennett, Nicholas T. Seyfried, Allan Levey, Aliza P. Wingo

Summary: Wingo et al. integrated depression GWAS results with human brain proteomes to perform proteome-wide association studies followed by Mendelian randomization. They identified 25 proteins as potential causal mediators of depression, of which 20 are new.

NATURE NEUROSCIENCE (2021)

Article Genetics & Heredity

Multi-tissue neocortical transcriptome-wide association study implicates 8 genes across 6 genomic loci in Alzheimer's disease

Jake Gockley, Kelsey S. Montgomery, William L. Poehlman, Jesse C. Wiley, Yue Liu, Ekaterina Gerasimov, Anna K. Greenwood, Solveig K. Sieberts, Aliza P. Wingo, Thomas S. Wingo, Lara M. Mangravite, Benjamin A. Logsdon

Summary: This study used the FUSION transcriptome-wide association study method to identify genetic variants driving Alzheimer's disease risk in multiple neocortical regions, revealing 8 genes significantly associated with AD. The results provide evidence of cis-genetic variation increasing AD risk through these 8 genes across six distinct genomic loci.

GENOME MEDICINE (2021)

Article Clinical Neurology

The Longitudinal Early-onset Alzheimer's Disease Study (LEADS): Framework and methodology

Liana G. Apostolova, Paul Aisen, Ani Eloyan, Anne Fagan, Keith N. Fargo, Tatiana Foroud, Constantine Gatsonis, Lea T. Grinberg, Clifford R. Jack, Joel Kramer, Robert Koeppe, Walter A. Kukull, Melissa E. Murray, Kelly Nudelman, Malia Rumbaugh, Arthur Toga, Prashanthi Vemuri, Amy Trullinger, Leonardo Iaccarino, Gregory S. Day, Neill R. Graff-Radford, Lawrence S. Honig, David T. Jones, Joseph Masdeu, Mario Mendez, Erik Musiek, Chiadi U. Onyike, Emily Rogalski, Steve Salloway, David A. Wolk, Thomas S. Wingo, Maria C. Carrillo, Bradford C. Dickerson, Gil D. Rabinovici

Summary: The Longitudinal EOAD Study (LEADS) aims to track EOAD patients, define their clinical, imaging, and fluid biomarker characteristics, develop sensitive cognitive and biomarker measures for future use, and establish a trial-ready network to advance Alzheimer's disease research.

ALZHEIMERS & DEMENTIA (2021)

Article Multidisciplinary Sciences

A machine learning approach to brain epigenetic analysis reveals kinases associated with Alzheimer's disease

Yanting Huang, Xiaobo Sun, Huige Jiang, Shaojun Yu, Chloe Robins, Matthew J. Armstrong, Ronghua Li, Zhen Mei, Xiaochuan Shi, Ekaterina Sergeevna Gerasimov, Philip L. De Jager, David A. Bennett, Aliza P. Wingo, Peng Jin, Thomas S. Wingo, Zhaohui S. Qin

Summary: The study introduces a method called EWASplus that extends the coverage of epigenome-wide association studies (EWAS) to the entire genome using supervised machine learning, and identifies novel brain CpG sites associated with Alzheimer's disease.

NATURE COMMUNICATIONS (2021)

Article Neurosciences

Genetic Evidence Supporting a Causal Role of Depression in Alzheimer's Disease

Nadia Harerimana, Yue Liu, Ekaterina S. Gerasimov, Duc Duong, Thomas G. Beach, Eric M. Reiman, Julie A. Schneider, Patricia Boyle, Adriana Lori, David A. Bennett, James J. Lah, Allan Levey, Nicholas T. Seyfried, Thomas S. Wingo, Aliza P. Wingo

Summary: This study found a genetic correlation between depression and Alzheimer's disease (AD), suggesting a shared genetic basis. Depression was found to have a causal role in AD, potentially driven by specific brain transcripts and proteins. The findings highlight the importance of understanding the relationship between depression and AD.

BIOLOGICAL PSYCHIATRY (2022)

Article Clinical Neurology

A phase II study repurposing atomoxetine for neuroprotection in mild cognitive impairment

Allan I. Levey, Deqiang Qiu, Liping Zhao, William T. Hu, Duc M. Duong, Lenora Higginbotham, Eric B. Dammer, Nicholas T. Seyfried, Thomas S. Wingo, Chadwick M. Hales, Malu Gamez Tansey, David S. Goldstein, Anees Abrol, Vince D. Calhoun, Felicia C. Goldstein, Ihab Hajjar, Anne M. Fagan, Doug Galasko, Steven D. Edland, John Hanfelt, James J. Lah, David Weinshenker

Summary: The study demonstrated that atomoxetine, a clinically approved noradrenaline reuptake inhibitor, improved multiple Alzheimer's disease biomarkers in individuals with mild cognitive impairment. Treatment with atomoxetine significantly reduced CSF levels of Tau and pTau, normalized CSF protein biomarker panels linked to synaptic function, brain metabolism, and glial immunity, and increased brain activity and metabolism in key temporal lobe circuits.

BRAIN (2022)

Article Neurosciences

Large-scale deep multi-layer analysis of Alzheimer's disease brain reveals strong proteomic disease-related changes not observed at the RNA level

Erik C. B. Johnson, E. Kathleen Carter, Eric B. Dammer, Duc M. Duong, Ekaterina S. Gerasimov, Yue Liu, Jiaqi Liu, Ranjita Betarbet, Lingyan Ping, Luming Yin, Geidy E. Serrano, Thomas G. Beach, Junmin Peng, Philip L. De Jager, Vahram Haroutunian, Bin Zhang, Chris Gaiteri, David A. Bennett, Marla Gearing, Thomas S. Wingo, Aliza P. Wingo, James J. Lah, Allan I. Levey, Nicholas T. Seyfried

Summary: This study analyzed the proteomes of over 1,000 brain tissues and identified new protein co-expression modules associated with Alzheimer's disease. These modules were highly conserved across cohorts and brain regions and revealed a proteopathic nature of the disease. The study also found disease-associated modules unique to the proteome, which could serve as potential therapeutic targets and biomarkers for Alzheimer's disease.

NATURE NEUROSCIENCE (2022)

Article Clinical Neurology

Neuropathologic Correlates of Human Cortical Proteins in Alzheimer Disease and Related Dementias

Lei Yu, Patricia A. Boyle, Aliza P. Wingo, Jingyun Yang, Tianhao Wang, Aron S. Buchman, Thomas S. Wingo, Nicholas T. Seyfried, Allan Levey, Philip L. De Jager, Julie A. Schneider, David A. Bennett

Summary: The cortical proteins implicated in Alzheimer's dementia were found to be more associated with non-AD neurodegenerative and cerebrovascular conditions rather than AD pathology. Some proteins were found to be pleiotropic and associated with both neurodegenerative and cerebrovascular pathologies.

NEUROLOGY (2022)

Article Psychiatry

Brain microRNAs are associated with variation in cognitive trajectory in advanced age

Aliza P. Wingo, Mengli Wang, Jiaqi Liu, Michael S. Breen, Hyun-Sik Yang, Beisha Tang, Julie A. Schneider, Nicholas T. Seyfried, James J. Lah, Allan Levey, David A. Bennett, Peng Jin, Philip L. De Jager, Thomas S. Wingo

Summary: This study identified miR-29a-3p and miR-132-3p as novel and independent contributors to cognitive trajectory in older adults. These microRNAs have a significant impact on cognitive performance and are not influenced by common neurodegenerative pathologies. Additionally, the findings provide a foundation for future studies to explore the mechanisms and interventions to enhance cognitive stability in advanced age.

TRANSLATIONAL PSYCHIATRY (2022)

Meeting Abstract Neurosciences

Protein Pathways Underlying PTSD and Stress-Related Disorders

Nikolaos Daskalakis, Christos Chatzinakos, Aliza Wingo, Clara Snijders, Rahul Bharadwaj, Thomas Wingo, Nick Seyfried, Duc Duong, Sabina Berretta, Joel Kleinman, Kerry Ressler

NEUROPSYCHOPHARMACOLOGY (2021)

Meeting Abstract Neurosciences

Integrating Human Brain Proteomes With Genome-Wide Association Results Identify Novel Brain Proteins in PTSD Pathogenesis

Thomas S. Wingo, Ekaterina S. Gerasimov, Yue Liu, Duc M. Duong, Adriana Lori, Jake Gockley, Sylvanus Toikumo, Michael Breen, Adam Maihofer, Caroline Nievergelt, Karestan Koenen, Kerry Ressler, Daniel Levey, Joel Gelernter, Murray Stein, David Bennett, Allan Levey, Nicholas Seyfried, Aliza Wingo

BIOLOGICAL PSYCHIATRY (2021)

Review Neurosciences

Traumatic Brain Injury and Opioids: Twin Plagues of the Twenty-First Century

Maya Jammoul, Dareen Jammoul, Kevin K. Wang, Firas Kobeissy, Ralph G. Depalma

Summary: This article reviews the possible mechanisms by which traumatic brain injury (TBI) may stimulate the development of opioid use disorder (OUD) and discusses the interaction between these two processes. CNS damage due to TBI appears to drive adverse effects of subsequent OUD, with pain being a risk factor for opioid use after TBI.

BIOLOGICAL PSYCHIATRY (2024)

Article Neurosciences

A Glucocorticoid-Sensitive Hippocampal Gene Network Moderates the Impact of Early-Life Adversity on Mental Health Outcomes

Danusa Mar Arcego, Jan-Paul Buschdorf, Nicholas O'Toole, Zihan Wang, Barbara Barth, Irina Pokhvisneva, Nirmala Arul Rayan, Sachin Patel, Euclides Jose de Mendonca Filho, Patrick Lee, Jennifer Tan, Ming Xuan Koh, Chu Ming Sim, Carine Parent, Randriely Merscher Sobreira de Lima, Andrew Clappison, Kieran J. O'Donnell, Carla Dalmaz, Janine Arloth, Nadine Provencal, Elisabeth B. Binder, Josie Diorio, Patricia Pelufo Silveira, Michael J. Meaney

Summary: This study investigates the impact of environmental influences on mental health by integrating transcriptomic data from animal models with human data. The results suggest that hippocampal glucocorticoid-related transcriptional activity mediates the effects of early adversity on neural mechanisms implicated in psychiatric disorders.

BIOLOGICAL PSYCHIATRY (2024)

Article Neurosciences

Dentate Gyrus Microstructure Is Associated With Resilience After Exposure to Maternal Stress Across Two Human Cohorts

Milenna T. van Dijk, Ardesheer Talati, Pratik Kashyap, Karan Desai, Nora C. Kelsall, Marc J. Gameroff, Natalie Aw, Eyal Abraham, Breda Cullen, Jiook Cha, Christoph Anacker, Myrna M. Weissman, Jonathan Posner

Summary: This study found that maternal stress is associated with future depressive symptoms and alterations in microstructure of the dentate gyrus (DG) in offspring. These results were consistent across two independent cohorts.

BIOLOGICAL PSYCHIATRY (2024)

Article Neurosciences

Traumatic Brain Injury-Induced Fear Generalization in Mice Involves Hippocampal Memory Trace Dysfunction and Is Alleviated by (R,S)-Ketamine

Josephine C. McGowan, Liliana R. Ladner, Claire X. Shubeck, Juliana Tapia, Christina T. LaGamma, Amanda Anqueira-Gonzalez, Ariana DeFrancesco, Briana K. Chen, Holly C. Hunsberger, Ezra J. Sydnor, Ryan W. Logan, Tzong-Shiue Yu, Steven G. Kernie, Christine A. Denny

Summary: Traumatic brain injury (TBI) leads to fear generalization by altering fear memory traces, and this symptom can be improved with (R,S)-ketamine.

BIOLOGICAL PSYCHIATRY (2024)