Ultra-High-Resolution IonStar Strategy Enhancing Accuracy and Precision of MS1-Based Proteomics and an Extensive Comparison with State-of-the-Art SWATH-MS in Large-Cohort Quantification

MS1 ion current‐based quantitative proteomics: A promising solution for reliable analysis of large biological cohorts

(2019) Xue Wang et al.   MASS SPECTROMETRY REVIEWS

Sensitive quantitative proteomics of human hematopoietic stem and progenitor cells by data-independent acquisition mass spectrometry

(2019) Sabine Amon et al.   MOLECULAR & CELLULAR PROTEOMICS

Tubulin mRNA stability is sensitive to change in microtubule dynamics caused by multiple physiological and toxic cues

(2019) Ivana Gasic et al.   PLOS BIOLOGY

Multi-batch TMT reveals false positives, batch effects and missing values

(2019) Alejandro Brenes et al.   MOLECULAR & CELLULAR PROTEOMICS

Sensitive, High-Throughput, and Robust Trapping-Micro-LC-MS Strategy for the Quantification of Biomarkers and Antibody Biotherapeutics

(2018) Ming Zhang et al.   ANALYTICAL CHEMISTRY

SWATH mass spectrometry as a tool for quantitative profiling of the matrisome

(2018) Lukas Krasny et al.   Journal of Proteomics

Paclitaxel suppresses proliferation and induces apoptosis through regulation of ROS and the AKT/MAPK signaling pathway in canine mammary gland tumor cells

(2018) Xiaoli Ren et al.   Molecular Medicine Reports

IonStar enables high-precision, low-missing-data proteomics quantification in large biological cohorts

(2018) Xiaomeng Shen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Surfactant Cocktail-Aided Extraction/Precipitation/On-Pellet Digestion Strategy Enables Efficient and Reproducible Sample Preparation for Large-Scale Quantitative Proteomics

(2018) Shichen Shen et al.   ANALYTICAL CHEMISTRY

Data‐independent acquisition‐based SWATH‐MS for quantitative proteomics: a tutorial

(2018) Christina Ludwig et al.   Molecular Systems Biology

Multiparameter Optimization of Two Common Proteomics Quantification Methods for Quantifying Low-Abundance Proteins

(2018) Chengqian Zhang et al.   JOURNAL OF PROTEOME RESEARCH

An IonStar Experimental Strategy for MS1 Ion Current-Based Quantification Using Ultrahigh-Field Orbitrap: Reproducible, In-Depth, and Accurate Protein Measurement in Large Cohorts

(2017) Xiaomeng Shen et al.   JOURNAL OF PROTEOME RESEARCH

Blood-based protein biomarkers for stroke differentiation: A systematic review

(2017) Shubham Misra et al.   Proteomics Clinical Applications

Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry

(2017) Ben C. Collins et al.   Nature Communications

Triple Quadrupole Versus High Resolution Quadrupole-Time-of-Flight Mass Spectrometry for Quantitative LC-MS/MS Analysis of 25-Hydroxyvitamin D in Human Serum

(2016) Timon Geib et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

SWATH Mass Spectrometry Performance Using Extended Peptide MS/MS Assay Libraries

(2016) Jemma X. Wu et al.   MOLECULAR & CELLULAR PROTEOMICS

A multicenter study benchmarks software tools for label-free proteome quantification

(2016) Pedro Navarro et al.   NATURE BIOTECHNOLOGY

Experimental Null Method to Guide the Development of Technical Procedures and to Control False-Positive Discovery in Quantitative Proteomics

(2015) Xiaomeng Shen et al.   JOURNAL OF PROTEOME RESEARCH

Extending the Limits of Quantitative Proteome Profiling with Data-Independent Acquisition and Application to Acetaminophen-Treated Three-Dimensional Liver Microtissues

(2015) Roland Bruderer et al.   MOLECULAR & CELLULAR PROTEOMICS

Paclitaxel and Its Evolving Role in the Management of Ovarian Cancer

(2015) Nirmala Chandralega Kampan et al.   Biomed Research International

Highly Multiplexed and Reproducible Ion-Current-Based Strategy for Large-Scale Quantitative Proteomics and the Application to Protein Expression Dynamics Induced by Methylprednisolone in 60 Rats

(2014) Eslam Nouri-Nigjeh et al.   ANALYTICAL CHEMISTRY

ICan: An Optimized Ion-Current-Based Quantification Procedure with Enhanced Quantitative Accuracy and Sensitivity in Biomarker Discovery

(2014) Chengjian Tu et al.   JOURNAL OF PROTEOME RESEARCH

Systematic Assessment of Survey Scan and MS2-Based Abundance Strategies for Label-Free Quantitative Proteomics Using High-Resolution MS Data

(2014) Chengjian Tu et al.   JOURNAL OF PROTEOME RESEARCH

How Taxol/paclitaxel kills cancer cells

(2014) Beth A. Weaver   MOLECULAR BIOLOGY OF THE CELL

Targeted Data Extraction of the MS/MS Spectra Generated by Data-independent Acquisition: A New Concept for Consistent and Accurate Proteome Analysis

(2012) Ludovic C. Gillet et al.   MOLECULAR & CELLULAR PROTEOMICS

Taxol-induced growth arrest and apoptosis is associated with the upregulation of the Cdk inhibitor, p21WAF1/CIP1, in human breast cancer cells

(2012) YUNG HYUN CHOI et al.   ONCOLOGY REPORTS

MS3 eliminates ratio distortion in isobaric multiplexed quantitative proteomics

(2011) Lily Ting et al.   NATURE METHODS

Addressing Accuracy and Precision Issues in iTRAQ Quantitation

(2010) Natasha A. Karp et al.   MOLECULAR & CELLULAR PROTEOMICS

Inhibition of the Androgen Receptor as a Novel Mechanism of Taxol Chemotherapy in Prostate Cancer

(2009) L. Gan et al.   CANCER RESEARCH