More Than Expected From Old Sponge Samples: A Natural Sampler DNA Metabarcoding Assessment of Marine Fish Diversity in Nha Trang Bay (Vietnam)

Environmental DNA survey captures patterns of fish and invertebrate diversity across a tropical seascape

(2020) Bryan N. Nguyen et al.   Scientific Reports

Space-time dynamics in monitoring neotropical fish communities using eDNA metabarcoding

(2020) Naiara Guimarães Sales et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Effect of water temperature and fish biomass on environmental DNA shedding, degradation, and size distribution

(2019) Toshiaki Jo et al.   Ecology and Evolution

Environmental DNA metabarcoding for fish community analysis in backwater lakes: A comparison of capture methods

(2019) Kazuya Fujii et al.   PLoS One

Sponges as natural environmental DNA samplers

(2019) Stefano Mariani et al.   CURRENT BIOLOGY

Cobble community DNA as a tool to monitor patterns of biodiversity within kelp forest ecosystems

(2019) Peter Shum et al.   Molecular Ecology Resources

Non‐specific amplification compromises environmental DNA metabarcoding with COI

(2019) Rupert A. Collins et al.   Methods in Ecology and Evolution

Sponges and Their Microbiomes Show Similar Community Metrics Across Impacted and Well-Preserved Reefs

(2019) Marta Turon et al.   Frontiers in Microbiology

Using vertebrate environmental DNA from seawater in biomonitoring of marine habitats

(2019) Eva Egelyng Sigsgaard et al.   CONSERVATION BIOLOGY

Understanding PCR Processes to Draw Meaningful Conclusions from Environmental DNA Studies

(2019) Ryan P. Kelly et al.   Scientific Reports

Biodiversity assessment of tropical shelf eukaryotic communities via pelagic eDNA metabarcoding

(2019) Judith Bakker et al.   Ecology and Evolution

Combined use of eDNA metabarcoding and video surveillance for the assessment of fish biodiversity

(2018) Michal Stat et al.   CONSERVATION BIOLOGY

Environmental DNA illuminates the dark diversity of sharks

(2018) Germain Boussarie et al.   Science Advances

Uses and Misuses of Environmental DNA in Biodiversity Science and Conservation

(2018) Melania E. Cristescu et al.   Annual Review of Ecology Evolution and Systematics

Environmental DNA reveals quantitative patterns of fish biodiversity in large rivers despite its downstream transportation

(2018) Didier Pont et al.   Scientific Reports

Showcasing the role of seawater in bacteria recruitment and microbiome stability in sponges

(2018) Marta Turon et al.   Scientific Reports

Environmental DNA (eDNA) metabarcoding reveals strong discrimination among diverse marine habitats connected by water movement

(2018) Gert-Jan Jeunen et al.   Molecular Ecology Resources

Metabarcoding of shrimp stomach content: Harnessing a natural sampler for fish biodiversity monitoring

(2018) Andjin Siegenthaler et al.   Molecular Ecology Resources

Environmental DNA metabarcoding: Transforming how we survey animal and plant communities

(2017) Kristy Deiner et al.   MOLECULAR ECOLOGY

Behavior and season affect crayfish detection and density inference using environmental DNA

(2017) Nicholas Dunn et al.   Ecology and Evolution

Spatial distribution of environmental DNA in a nearshore marine habitat

(2017) James L. O’Donnell et al.   PeerJ

Environmental DNA metabarcoding reveals local fish communities in a species-rich coastal sea

(2017) Satoshi Yamamoto et al.   Scientific Reports

Influence of anthropogenic pressure and seasonal upwelling on coral reefs in Nha Trang Bay (Central Vietnam)

(2016) Konstantin S. Tkachenko et al.   Marine Ecology-An Evolutionary Perspective

Estimating fish abundance and biomass from eDNA concentrations: variability among capture methods and environmental conditions

(2016) Anaïs Lacoursière-Roussel et al.   Molecular Ecology Resources

Critical considerations for the application of environmental DNA methods to detect aquatic species

(2016) Caren S. Goldberg et al.   Methods in Ecology and Evolution

The ecologist's field guide to sequence-based identification of biodiversity

(2016) Simon Creer et al.   Methods in Ecology and Evolution

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Quantification of eDNA shedding rates from invasive bighead carp Hypophthalmichthys nobilis and silver carp Hypophthalmichthys molitrix

(2015) Katy E. Klymus et al.   BIOLOGICAL CONSERVATION

Environmental DNA – An emerging tool in conservation for monitoring past and present biodiversity

(2015) Philip Francis Thomsen et al.   BIOLOGICAL CONSERVATION

Assessing vertebrate biodiversity in a kelp forest ecosystem using environmental DNA

(2015) Jesse A. Port et al.   MOLECULAR ECOLOGY

Making environmental DNA count

(2015) Ryan P. Kelly   Molecular Ecology Resources

obitools: aunix-inspired software package for DNA metabarcoding

(2015) Frédéric Boyer et al.   Molecular Ecology Resources

Swarm v2: highly-scalable and high-resolution amplicon clustering

(2015) Frédéric Mahé et al.   PeerJ

MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of more than 230 subtropical marine species

(2015) M. Miya et al.   Royal Society Open Science

Using Environmental DNA to Census Marine Fishes in a Large Mesocosm

(2014) Ryan P. Kelly et al.   PLoS One

The Release Rate of Environmental DNA from Juvenile and Adult Fish

(2014) Atsushi Maruyama et al.   PLoS One

Harnessing DNA to improve environmental management

(2014) R. P. Kelly et al.   SCIENCE

Global Diversity of Sponges (Porifera)

(2012) Rob W. M. Van Soest et al.   PLoS One

Monitoring endangered freshwater biodiversity using environmental DNA

(2011) PHILIP FRANCIS THOMSEN et al.   MOLECULAR ECOLOGY