Environment and host species identity shape gut microbiota diversity in sympatric herbivorous mammals

Species identity dominates over environment in shaping the microbiota of small mammals

(2019) S. C. L. Knowles et al.   ECOLOGY LETTERS

Host diet and evolutionary history explain different aspects of gut microbiome diversity among vertebrate clades

(2019) Nicholas D. Youngblut et al.   Nature Communications

Diet simplification selects for high gut microbial diversity and strong fermenting ability in high-altitude pikas

(2018) Huan Li et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Correlation between gut microbiota and personality in adults: A cross-sectional study

(2018) Han-Na Kim et al.   BRAIN BEHAVIOR AND IMMUNITY

Evolution for extreme living: variation in mitochondrial cytochrome c oxidase genes correlated with elevation in pikas (genus Ochotona )

(2018) Katherine A. Solari et al.   Integrative Zoology

Functional-trait ecology of the plateau pika Ochotona curzoniae (Hodgson, 1858) in the Qinghai-Tibetan Plateau ecosystem

(2018) Andrew T. SMITH et al.   Integrative Zoology

Adaptation strategies of yak to seasonally driven environmental temperatures in its natural habitat

(2018) G. Krishnan et al.   INTERNATIONAL JOURNAL OF BIOMETEOROLOGY

Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes

(2018) Katherine R. Amato et al.   ISME Journal

Rates of gut microbiome divergence in mammals

(2018) Alex H. Nishida et al.   MOLECULAR ECOLOGY

Multilevel social structure and diet shape the gut microbiota of the gelada monkey, the only grazing primate

(2018) Pål Trosvik et al.   Microbiome

Huddling remodels gut microbiota to reduce energy requirements in a small mammal species during cold exposure

(2018) Xue-Ying Zhang et al.   Microbiome

Terrestriality and bacterial transfer: a comparative study of gut microbiomes in sympatric Malagasy mammals

(2018) Amanda C. Perofsky et al.   ISME Journal

Environment dominates over host genetics in shaping human gut microbiota

(2018) Daphna Rothschild et al.   NATURE

Dietary shifts influenced by livestock grazing shape the gut microbiota composition and co-occurrence networks in a local rodent species

(2018) Guoliang Li et al.   JOURNAL OF ANIMAL ECOLOGY

Gut microbial communities of American pikas (Ochotona princeps ): Evidence for phylosymbiosis and adaptations to novel diets

(2017) Kevin D. Kohl et al.   JOURNAL OF ANIMAL ECOLOGY

An Easily-Assembled Soxhlet Extractor to Demonstrate Continuous Extraction

(2017) Kevin M. Jones et al.   JOURNAL OF CHEMICAL EDUCATION

Codiversification of gastrointestinal microbiota and phylogeny in passerines is not explained by ecological divergence

(2017) Lucie Kropáčková et al.   MOLECULAR ECOLOGY

Genetics, morphology and ecology reveal a cryptic pika lineage in the Sikkim Himalaya

(2017) Nishma Dahal et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Seasonal cycling in the gut microbiome of the Hadza hunter-gatherers of Tanzania

(2017) Samuel A. Smits et al.   SCIENCE

Unraveling the processes shaping mammalian gut microbiomes over evolutionary time

(2017) Mathieu Groussin et al.   Nature Communications

Seasonal, spatial, and maternal effects on gut microbiome in wild red squirrels

(2017) Tiantian Ren et al.   Microbiome

The more the merrier? Multi-species grazing of small herbivores mediates plant community impacts

(2016) Jiapeng Qu et al.   BIODIVERSITY AND CONSERVATION

The interconnected rhizosphere: High network complexity dominates rhizosphere assemblages

(2016) Shengjing Shi et al.   ECOLOGY LETTERS

Diet-induced extinctions in the gut microbiota compound over generations

(2016) Erica D. Sonnenburg et al.   NATURE

Environment shapes the fecal microbiome of invasive carp species

(2016) Jessica J. Eichmiller et al.   Microbiome

Social behavior shapes the chimpanzee pan-microbiome

(2016) A. H. Moeller et al.   Science Advances

Gut Microbiota Orchestrates Energy Homeostasis during Cold

(2015) Claire Chevalier et al.   CELL

Marked seasonal variation in the wild mouse gut microbiota

(2015) Corinne F Maurice et al.   ISME Journal

Diet is the primary determinant of bacterial community structure in the guts of higher termites

(2015) Aram Mikaelyan et al.   MOLECULAR ECOLOGY

The giant panda gut microbiome

(2015) Fuwen Wei et al.   TRENDS IN MICROBIOLOGY

Baleen whales host a unique gut microbiome with similarities to both carnivores and herbivores

(2015) Jon G. Sanders et al.   Nature Communications

Herbivory and Competition of Tibetan Steppe Vegetation in Winter Pasture: Effects of Livestock Exclosure and Plateau Pika Reduction

(2015) Richard B. Harris et al.   PLoS One

Gut microbes of mammalian herbivores facilitate intake of plant toxins

(2014) Kevin D. Kohl et al.   ECOLOGY LETTERS

An integrated catalog of reference genes in the human gut microbiome

(2014) Junhua Li et al.   NATURE BIOTECHNOLOGY

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Identification of tannin–degrading microorganisms in the gut of plateau pikas (Ochotona curzoniae) and root voles (Microtus oeconomus)

(2014) Xin Dai et al.   SYMBIOSIS

A review of formation mechanism and restoration measures of “black-soil-type” degraded grassland in the Qinghai-Tibetan Plateau

(2013) Quan-Min Dong et al.   Environmental Earth Sciences

Degradation of the potential rodent contraceptive quinestrol and elimination of its estrogenic activity in soil and water

(2013) Quan Zhang et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Convergence of gut microbiomes in myrmecophagous mammals

(2013) Frédéric Delsuc et al.   MOLECULAR ECOLOGY

Gut metagenome in European women with normal, impaired and diabetic glucose control

(2013) Fredrik H. Karlsson et al.   NATURE

Identification of Hepatotropic Viruses from Plasma Using Deep Sequencing: A Next Generation Diagnostic Tool

(2013) John Law et al.   PLoS One

Cross-talk between Akkermansia muciniphila and intestinal epithelium controls diet-induced obesity

(2013) A. Everard et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Social network correlates of food availability in an endangered population of killer whales, Orcinus orca

(2012) Emma A. Foster et al.   ANIMAL BEHAVIOUR

Molecular ecological network analyses

(2012) Ye Deng et al.   BMC BIOINFORMATICS

Life history of the plateau pika (Ochotona curzoniae) in alpine meadows of the Tibetan Plateau

(2012) Jiapeng Qu et al.   MAMMALIAN BIOLOGY

Effects of quinestrol and levonorgestrel on populations of plateau pikas, Ochotona curzoniae, in the Qinghai-Tibetan Plateau

(2012) Ming Liu et al.   PEST MANAGEMENT SCIENCE

Unravelling the effects of the environment and host genotype on the gut microbiome

(2011) Aymé Spor et al.   NATURE REVIEWS MICROBIOLOGY

Diet Drives Convergence in Gut Microbiome Functions Across Mammalian Phylogeny and Within Humans

(2011) B. D. Muegge et al.   SCIENCE

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Extracellular polymeric substances (EPS) of microbial aggregates in biological wastewater treatment systems: A review

(2010) Guo-Ping Sheng et al.   BIOTECHNOLOGY ADVANCES

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Cyclicity in the structure of female baboon social networks

(2009) S. P. Henzi et al.   BEHAVIORAL ECOLOGY AND SOCIOBIOLOGY

WHEN COLD IS BETTER: CLIMATE-DRIVEN ELEVATION SHIFTS YIELD COMPLEX PATTERNS OF DIVERSIFICATION AND DEMOGRAPHY IN AN ALPINE SPECIALIST (AMERICAN PIKA,OCHOTONA PRINCEPS)

(2009) Kurt E. Galbreath et al.   EVOLUTION

High-Fat Diet Determines the Composition of the Murine Gut Microbiome Independently of Obesity

(2009) Marie A. Hildebrandt et al.   GASTROENTEROLOGY