Single-cell profiling of the human decidual immune microenvironment in patients with recurrent pregnancy loss

Distinctive phenotypes and functions of innate lymphoid cells in human decidua during early pregnancy

(2020) Oisín Huhn et al.   Nature Communications

Benchmarking single-cell RNA-sequencing protocols for cell atlas projects

(2020) Elisabetta Mereu et al.   NATURE BIOTECHNOLOGY

T Helper (Th) Cell Profiles in Pregnancy and Recurrent Pregnancy Losses: Th1/Th2/Th9/Th17/Th22/Tfh Cells

(2020) Wenjuan Wang et al.   Frontiers in Immunology

Characterization of cell fate probabilities in single-cell data with Palantir

(2019) Manu Setty et al.   NATURE BIOTECHNOLOGY

Fast, sensitive and accurate integration of single-cell data with Harmony

(2019) Ilya Korsunsky et al.   NATURE METHODS

Single cell transcriptional signatures of the human placenta in term and preterm parturition

(2019) Roger Pique-Regi et al.   eLife

ATAC-pipe: general analysis of genome-wide chromatin accessibility

(2018) Zuqi Zuo et al.   BRIEFINGS IN BIOINFORMATICS

Single-Cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment

(2018) Elham Azizi et al.   CELL

Integrating single-cell transcriptomic data across different conditions, technologies, and species

(2018) Andrew Butler et al.   NATURE BIOTECHNOLOGY

SAVER: gene expression recovery for single-cell RNA sequencing

(2018) Mo Huang et al.   NATURE METHODS

Single-cell RNA-seq reveals the diversity of trophoblast subtypes and patterns of differentiation in the human placenta 

(2018) Yawei Liu et al.   CELL RESEARCH

RNA velocity of single cells

(2018) Gioele La Manno et al.   NATURE

Single-cell reconstruction of the early maternal–fetal interface in humans

(2018) Roser Vento-Tormo et al.   NATURE

STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets

(2018) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

A single-cell survey of the human first-trimester placenta and decidua

(2018) Hemant Suryawanshi et al.   Science Advances

Single-cell transcriptomics of the human placenta: inferring the cell communication network of the maternal-fetal interface

(2017) Mihaela Pavličev et al.   GENOME RESEARCH

Natural Killer Cells Promote Fetal Development through the Secretion of Growth-Promoting Factors

(2017) Binqing Fu et al.   IMMUNITY

Interferon-γ Represses M2 Gene Expression in Human Macrophages by Disassembling Enhancers Bound by the Transcription Factor MAF

(2017) Kyuho Kang et al.   IMMUNITY

Integrative single-cell and cell-free plasma RNA transcriptomics elucidates placental cellular dynamics

(2017) Jason C. H. Tsang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Massively parallel digital transcriptional profiling of single cells

(2017) Grace X. Y. Zheng et al.   Nature Communications

The Role of Decidual Macrophages During Normal and Pathological Pregnancy

(2016) Fen Ning et al.   AMERICAN JOURNAL OF REPRODUCTIVE IMMUNOLOGY

Innate Immune System at the Maternal-Fetal Interface: Mechanisms of Disease and Targets of Therapy in Pregnancy Syndromes

(2016) Paola Triggianese et al.   AMERICAN JOURNAL OF REPRODUCTIVE IMMUNOLOGY

An M1-like Macrophage Polarization in Decidual Tissue during Spontaneous Preterm Labor That Is Attenuated by Rosiglitazone Treatment

(2016) Yi Xu et al.   JOURNAL OF IMMUNOLOGY

Single-cell RNA-seq reveals cell type-specific transcriptional signatures at the maternal–foetal interface during pregnancy

(2016) Andrew C. Nelson et al.   Nature Communications

What are the roles of macrophages and monocytes in human pregnancy?

(2015) Mao-Xing Tang et al.   JOURNAL OF REPRODUCTIVE IMMUNOLOGY

Recurrent miscarriage: causes, evaluation and management

(2015) Carmen Garrido-Gimenez et al.   POSTGRADUATE MEDICAL JOURNAL

T cell behavior at the maternal-fetal interface

(2014) Patrice Nancy et al.   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY

Monocytes and Macrophages in Pregnancy and Pre-Eclampsia

(2014) Marijke M. Faas et al.   Frontiers in Immunology

Immunology of the Maternal-Fetal Interface

(2013) Adrian Erlebacher   Annual Review of Immunology

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position

(2013) Jason D Buenrostro et al.   NATURE METHODS

Human Cytomegalovirus Infection Elicits New Decidual Natural Killer Cell Effector Functions

(2013) Johan Siewiera et al.   PLoS Pathogens

Definitions of infertility and recurrent pregnancy loss: a committee opinion

(2012)   FERTILITY AND STERILITY

The importance of the macrophage within the human endometrium

(2012) U. Thiruchelvam et al.   JOURNAL OF LEUKOCYTE BIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Natural killer cells promote immune tolerance by regulating inflammatory TH17 cells at the human maternal-fetal interface

(2012) B. Fu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Macrophages at the Fetal-Maternal Interface Express Markers of Alternative Activation and Are Induced by M-CSF and IL-10

(2011) J. Svensson et al.   JOURNAL OF IMMUNOLOGY

Th1/Th2/Th17 and Regulatory T-Cell Paradigm in Pregnancy

(2010) Shigeru Saito et al.   AMERICAN JOURNAL OF REPRODUCTIVE IMMUNOLOGY

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

GREAT improves functional interpretation of cis-regulatory regions

(2010) Cory Y McLean et al.   NATURE BIOTECHNOLOGY

Crosstalk between decidual NK and CD14+ myelomonocytic cells results in induction of Tregs and immunosuppression

(2010) P. Vacca et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY