Pattern blending enriches the diversity of animal colorations

An R package and online resource for macroevolutionary studies using the ray‐finned fish tree of life

(2019) Jonathan Chang et al.   Methods in Ecology and Evolution

Zebrafish Pigment Pattern Formation: Insights into the Development and Evolution of Adult Form

(2019) Larissa B. Patterson et al.   Annual Review of Genetics

Adaptive introgression underlies polymorphic seasonal camouflage in snowshoe hares

(2018) Matthew R. Jones et al.   SCIENCE

An inverse latitudinal gradient in speciation rate for marine fishes

(2018) Daniel L. Rabosky et al.   NATURE

The periodic coloration in birds forms through a prepattern of somite origin

(2018) Nicolas Haupaix et al.   SCIENCE

Phylogenomics uncovers early hybridization and adaptive loci shaping the radiation of Lake Tanganyika cichlid fishes

(2018) Iker Irisarri et al.   Nature Communications

Role of sexual imprinting in assortative mating and premating isolation in Darwin’s finches

(2018) Peter R. Grant et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Agouti-related peptide 2 facilitates convergent evolution of stripe patterns across cichlid fish radiations

(2018) Claudius F. Kratochwil et al.   SCIENCE

PAT ‐ GEOM : A Software Package for the Analysis of Animal Patterns

(2018) Ian Z.W. Chan et al.   Methods in Ecology and Evolution

Whole-genome sequences of Malawi cichlids reveal multiple radiations interconnected by gene flow

(2018) Milan Malinsky et al.   Nature Ecology & Evolution

BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics

(2017) Robert M Waterhouse et al.   MOLECULAR BIOLOGY AND EVOLUTION

Rapid hybrid speciation in Darwin’s finches

(2017) Sangeet Lamichhaney et al.   SCIENCE

The biology of color

(2017) Innes C. Cuthill et al.   SCIENCE

Ancient hybridization fuels rapid cichlid fish adaptive radiations

(2017) Joana I. Meier et al.   Nature Communications

A new pufferfish, Arothron multilineatus (Actinopterygii: Tetraodontiformes: Tetraodontidae), from the Indo-West Pacific

(2016) Keiichi Matsuura   ICHTHYOLOGICAL RESEARCH

Developmental mechanisms of stripe patterns in rodents

(2016) Ricardo Mallarino et al.   NATURE

Assessing the robustness of spatial pattern sequences in a dryland vegetation model

(2016) Karna Gowda et al.   PROCEEDINGS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES

Zebrafish Stripes as a Model for Vertebrate Colour Pattern Formation

(2015) Ajeet Pratap Singh et al.   CURRENT BIOLOGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

ANGSD: Analysis of Next Generation Sequencing Data

(2014) Thorfinn Sand Korneliussen et al.   BMC BIOINFORMATICS

Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads

(2014) Rei Kajitani et al.   GENOME RESEARCH

Characterization of ancient and modern genomes by SNP detection and phylogenomic and metagenomic analysis using PALEOMIX

(2014) Mikkel Schubert et al.   Nature Protocols

The function of zebra stripes

(2014) Tim Caro et al.   Nature Communications

Assortative Mating in Animals

(2013) Yuexin Jiang et al.   AMERICAN NATURALIST

Estimating Individual Admixture Proportions from Next Generation Sequencing Data

(2013) Line Skotte et al.   GENETICS

MitoFish and MitoAnnotator: A Mitochondrial Genome Database of Fish with an Accurate and Automatic Annotation Pipeline

(2013) W. Iwasaki et al.   MOLECULAR BIOLOGY AND EVOLUTION

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Single-stranded DNA library preparation for the sequencing of ancient or damaged DNA

(2013) Marie-Theres Gansauge et al.   Nature Protocols

Estimating ancestry and heterozygosity of hybrids using molecular markers

(2012) Benjamin M Fitzpatrick   BMC EVOLUTIONARY BIOLOGY

Butterfly genome reveals promiscuous exchange of mimicry adaptations among species

(2012) Kanchon K. Dasmahapatra et al.   NATURE

Specifying and Sustaining Pigmentation Patterns in Domestic and Wild Cats

(2012) C. B. Kaelin et al.   SCIENCE

Kakusan4 and Aminosan: two programs for comparing nonpartitioned, proportional and separate models for combined molecular phylogenetic analyses of multilocus sequence data

(2011) AKIFUMI S. TANABE   Molecular Ecology Resources

Generation of a novel wing colour pattern by the Wingless morphogen

(2010) Thomas Werner et al.   NATURE

Reaction-Diffusion Model as a Framework for Understanding Biological Pattern Formation

(2010) S. Kondo et al.   SCIENCE

A Draft Sequence of the Neandertal Genome

(2010) R. E. Green et al.   SCIENCE

Blending of animal colour patterns by hybridization

(2010) Seita Miyazawa et al.   Nature Communications

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

Explosive Speciation of Takifugu: Another Use of Fugu as a Model System for Evolutionary Biology

(2008) Y. Yamanoue et al.   MOLECULAR BIOLOGY AND EVOLUTION

Speciation through sensory drive in cichlid fish

(2008) Ole Seehausen et al.   NATURE