Phospho-islands and the evolution of phosphorylated amino acids in mammals

Identification of Intrinsic Disorder in Complexes from the Protein Data Bank

(2020) Jianhong Zhou et al.   ACS Omega

Evaluation of functionality for serine and threonine phosphorylation with different evolutionary ages in human and mouse

(2018) Benpeng Miao et al.   BMC GENOMICS

UniProt: a worldwide hub of protein knowledge

(2018)   NUCLEIC ACIDS RESEARCH

The crucial role of protein phosphorylation in cell signaling and its use as targeted therapy (Review)

(2017) Fatima Ardito et al.   INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE

TimeTree: A Resource for Timelines, Timetrees, and Divergence Times

(2017) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

iPTMnet: an integrated resource for protein post-translational modification network discovery

(2017) Hongzhan Huang et al.   NUCLEIC ACIDS RESEARCH

The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces

(2017) Adrian M Altenhoff et al.   NUCLEIC ACIDS RESEARCH

An Optimized Shotgun Strategy for the Rapid Generation of Comprehensive Human Proteomes

(2017) Dorte B. Bekker-Jensen et al.   Cell Systems

Mass spectrometry-based quantification of the cellular response to ultraviolet radiation in HeLa cells

(2017) Hong Xu et al.   PLoS One

Evolution of protein phosphorylation across 18 fungal species

(2016) R. A. Studer et al.   SCIENCE

Classification of Intrinsically Disordered Regions and Proteins

(2014) Robin van der Lee et al.   CHEMICAL REVIEWS

Turnover of protein phosphorylation evolving under stabilizing selection

(2014) Christian R. Landry et al.   Frontiers in Genetics

Physicochemical mechanisms of protein regulation by phosphorylation

(2014) Hafumi Nishi et al.   Frontiers in Genetics

Characterising ChIP-seq binding patterns by model-based peak shape deconvolution

(2013) Marco-Antonio Mendoza-Parra et al.   BMC GENOMICS

Comprehensive Comparative Assessment of In-Silico Predictors of Disordered Regions

(2012) Zhen-Ling Peng et al.   CURRENT PROTEIN & PEPTIDE SCIENCE

Modular evolution of phosphorylation-based signalling systems

(2012) J. Jin et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Evolutionary patterns of phosphorylated serines

(2011) Yerbol Z Kurmangaliyev et al.   Biology Direct

A Mechanism for the Evolution of Phosphorylation Sites

(2011) Samuel M. Pearlman et al.   CELL

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

PONDR-FIT: A meta-predictor of intrinsically disordered amino acids

(2010) Bin Xue et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Cooperativity within proximal phosphorylation sites is revealed from large-scale proteomics data

(2010) Regev Schweiger et al.   Biology Direct

A Tissue-Specific Atlas of Mouse Protein Phosphorylation and Expression

(2010) Edward L. Huttlin et al.   CELL

Moving from transcriptional to phospho-evolution: generalizing regulatory evolution?

(2010) Alan M. Moses et al.   TRENDS IN GENETICS