Ensemble-AMPPred: Robust AMP Prediction and Recognition Using the Ensemble Learning Method with a New Hybrid Feature for Differentiating AMPs

Characterization and Identification of Natural Antimicrobial Peptides on Different Organisms

(2020) Chia-Ru Chung et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Computer-Aided Design of Antimicrobial Peptides: Are We Generating Effective Drug Candidates?

(2020) Marlon H. Cardoso et al.   Frontiers in Microbiology

Peptide Design Principles for Antimicrobial Applications

(2019) Marcelo D.T. Torres et al.   JOURNAL OF MOLECULAR BIOLOGY

Recent Progress in Machine Learning-based Prediction of Peptide Activity for Drug Discovery

(2019) Qihui Wu et al.   CURRENT TOPICS IN MEDICINAL CHEMISTRY

mACPpred: A Support Vector Machine-Based Meta-Predictor for Identification of Anticancer Peptides

(2019) Vinothini Boopathi et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

DRAMP 2.0, an updated data repository of antimicrobial peptides

(2019) Xinyue Kang et al.   Scientific Data

BIOPEP-UWM Database of Bioactive Peptides: Current Opportunities

(2019) Minkiewicz et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Deep learning improves antimicrobial peptide recognition

(2018) Daniel Veltri et al.   BIOINFORMATICS

SpirPep: an in silico digestion-based platform to assist bioactive peptides discovery from a genome-wide database

(2018) Krittima Anekthanakul et al.   BMC BIOINFORMATICS

A brief review on software tools in generating Chou’s pseudo-factor representations for all types of biological sequences

(2018) Wei Zhao et al.   PROTEIN AND PEPTIDE LETTERS

Predicting antimicrobial peptides with improved accuracy by incorporating the compositional, physico-chemical and structural features into Chou’s general PseAAC

(2017) Prabina Kumar Meher et al.   Scientific Reports

Imbalanced multi-label learning for identifying antimicrobial peptides and their functional types

(2016) Weizhong Lin et al.   BIOINFORMATICS

UniProt: the universal protein knowledgebase

(2016)   NUCLEIC ACIDS RESEARCH

Understanding bacterial resistance to antimicrobial peptides: From the surface to deep inside

(2015) Simone Maria-Neto et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

protr/ProtrWeb: R package and web server for generating various numerical representation schemes of protein sequences

(2015) Nan Xiao et al.   BIOINFORMATICS

Pse-in-One: a web server for generating various modes of pseudo components of DNA, RNA, and protein sequences

(2015) Bin Liu et al.   NUCLEIC ACIDS RESEARCH

CAMPR3: a database on sequences, structures and signatures of antimicrobial peptides: Table 1.

(2015) Faiza Hanif Waghu et al.   NUCLEIC ACIDS RESEARCH

DBAASP v.2: an enhanced database of structure and antimicrobial/cytotoxic activity of natural and synthetic peptides

(2015) Malak Pirtskhalava et al.   NUCLEIC ACIDS RESEARCH

APD3: the antimicrobial peptide database as a tool for research and education

(2015) Guangshun Wang et al.   NUCLEIC ACIDS RESEARCH

CancerPPD: a database of anticancer peptides and proteins

(2014) Atul Tyagi et al.   NUCLEIC ACIDS RESEARCH

ParaPep: a web resource for experimentally validated antiparasitic peptide sequences and their structures

(2014) D. Mehta et al.   Database-The Journal of Biological Databases and Curation

iAMP-2L: A two-level multi-label classifier for identifying antimicrobial peptides and their functional types

(2013) Xuan Xiao et al.   ANALYTICAL BIOCHEMISTRY

BAGEL3: automated identification of genes encoding bacteriocins and (non-)bactericidal posttranslationally modified peptides

(2013) Auke J. van Heel et al.   NUCLEIC ACIDS RESEARCH

LAMP: A Database Linking Antimicrobial Peptides

(2013) Xiaowei Zhao et al.   PLoS One

LIBSVM

(2012) Chih-Chung Chang et al.   ACM Transactions on Intelligent Systems and Technology

AMPA: an automated web server for prediction of protein antimicrobial regions

(2011) Marc Torrent et al.   BIOINFORMATICS

AntiBP2: improved version of antibacterial peptide prediction

(2010) Sneh Lata et al.   BMC BIOINFORMATICS

BACTIBASE second release: a database and tool platform for bacteriocin characterization

(2010) Riadh Hammami et al.   BMC MICROBIOLOGY

Some remarks on protein attribute prediction and pseudo amino acid composition

(2010) Kuo-Chen Chou   JOURNAL OF THEORETICAL BIOLOGY

A theoretical approach to spot active regions in antimicrobial proteins

(2009) Marc Torrent et al.   BMC BIOINFORMATICS

Identification of Novel Antibacterial Peptides by Chemoinformatics and Machine Learning†

(2009) Christopher D. Fjell et al.   JOURNAL OF MEDICINAL CHEMISTRY

Using the nonlinear dimensionality reduction method for the prediction of subcellular localization of Gram-negative bacterial proteins

(2009) Tong Wang et al.   MOLECULAR DIVERSITY

CAMP: a useful resource for research on antimicrobial peptides

(2009) Shaini Thomas et al.   NUCLEIC ACIDS RESEARCH

RAPD: a database of recombinantly-produced antimicrobial peptides

(2008) Yifeng Li et al.   FEMS MICROBIOLOGY LETTERS

APD2: the updated antimicrobial peptide database and its application in peptide design

(2008) Guangshun Wang et al.   NUCLEIC ACIDS RESEARCH

PhytAMP: a database dedicated to antimicrobial plant peptides

(2008) R. Hammami et al.   NUCLEIC ACIDS RESEARCH