Genome-Wide Association Study of Root System Development at Seedling Stage in Rice

TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data

(2020) Chengjie Chen et al.   Molecular Plant

Genetic basis and identification of candidate genes for salt tolerance in rice by GWAS

(2020) Jie Yuan et al.   Scientific Reports

Rice Os DOF 15 contributes to ethylene‐inhibited primary root elongation under salt stress

(2019) Hua Qin et al.   NEW PHYTOLOGIST

A novel rice grain size gene OsSNB was identified by genome-wide association study in natural population

(2019) Xiaosong Ma et al.   PLoS Genetics

Functional Divergence of PIN1 Paralogous Genes in Rice

(2019) Yong Li et al.   PLANT AND CELL PHYSIOLOGY

Transcription factor OsNF-YB9 regulates reproductive growth and development in rice

(2019) Sweta Das et al.   PLANTA

GWAS with principal component analysis identifies a gene comprehensively controlling rice architecture

(2019) Kenji Yano et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Two dioxygenases, SLC1 and SLC2, play essential roles in shoot development of rice

(2019) Xiong Liu et al.   JOURNAL OF EXPERIMENTAL BOTANY

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome wide association and gene validation studies for early root vigor to improve direct seeding of rice

(2018) Fanmiao Wang et al.   PLANT CELL AND ENVIRONMENT

Genome-Wide Association Study Using Historical Breeding Populations Discovers Genomic Regions Involved in High-Quality Rice

(2018) Gastón Quero et al.   Plant Genome

Big Grain3 , encoding a purine permease, regulates grain size via modulating cytokinin transport in rice

(2018) Yunhua Xiao et al.   Journal of Integrative Plant Biology

OsPIN1b is Involved in Rice Seminal Root Elongation by Regulating Root Apical Meristem Activity in Response to Low Nitrogen and Phosphate

(2018) Huwei Sun et al.   Scientific Reports

Overexpression of an auxin receptor OsAFB6 significantly enhanced grain yield by increasing cytokinin and decreasing auxin concentrations in rice panicle

(2018) Qin He et al.   Scientific Reports

Loci and natural alleles underlying robust roots and adaptive domestication of upland ecotype rice in aerobic conditions

(2018) Yan Zhao et al.   PLoS Genetics

PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format files

(2018) Chi Zhang et al.   BIOINFORMATICS

The MHC in the era of next-generation sequencing: Implications for bridging structure with function

(2018) Effie W. Petersdorf et al.   HUMAN IMMUNOLOGY

Transcriptional regulatory network of WOX11 is involved in the control of crown root development, cytokinin signals, and redox in rice

(2017) Wei Jiang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genetic control of the root system in rice under normal and drought stress conditions by genome-wide association study

(2017) Xiaokai Li et al.   PLoS Genetics

Genome-wide resequencing of KRICE_CORE reveals their potential for future breeding, as well as functional and evolutionary studies in the post-genomic era

(2016) Tae-Sung Kim et al.   BMC GENOMICS

pophelper: an R package and web app to analyse and visualize population structure

(2016) R. M. Francis   Molecular Ecology Resources

Genome-wide association study using whole-genome sequencing rapidly identifies new genes influencing agronomic traits in rice

(2016) Kenji Yano et al.   NATURE GENETICS

Iterative Usage of Fixed and Random Effect Models for Powerful and Efficient Genome-Wide Association Studies

(2016) Xiaolei Liu et al.   PLoS Genetics

COLD1 Confers Chilling Tolerance in Rice

(2015) Yun Ma et al.   CELL

Designing climate-resilient rice with ideal grain quality suited for high-temperature stress

(2015) Nese Sreenivasulu et al.   JOURNAL OF EXPERIMENTAL BOTANY

The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling

(2015) Yu Zhao et al.   PLANT CELL

OsAUX1 controls lateral root initiation in rice (Oryza sativa L.)

(2015) Heming Zhao et al.   PLANT CELL AND ENVIRONMENT

Analysis of non-coding transcriptome in rice and maize uncovers roles of conserved lncRNAs associated with agriculture traits

(2015) Huan Wang et al.   PLANT JOURNAL

Root Morphology Was Improved in a Late-Stage Vigor Super Rice Cultivar

(2015) Min Huang et al.   PLoS One

Short-Term Complete Submergence of Rice at the Tillering Stage Increases Yield

(2015) Yajie Zhang et al.   PLoS One

popart: full-feature software for haplotype network construction

(2015) Jessica W. Leigh et al.   Methods in Ecology and Evolution

B-GATA transcription factors – insights into their structure, regulation, and role in plant development

(2015) Carina Behringer et al.   Frontiers in Plant Science

An overview of global rice production, supply, trade, and consumption

(2014) Sumithra Muthayya et al.   Annals of the New York Academy of Sciences

Identification of CROWN ROOTLESS1-regulated genes in rice reveals specific and conserved elements of postembryonic root formation

(2014) Yoan Coudert et al.   NEW PHYTOLOGIST

Two Rice Authentic Histidine Phosphotransfer Proteins, OsAHP1 and OsAHP2, Mediate Cytokinin Signaling and Stress Responses in Rice

(2014) L. Sun et al.   PLANT PHYSIOLOGY

Combining high-throughput phenotyping and genome-wide association studies to reveal natural genetic variation in rice

(2014) Wanneng Yang et al.   Nature Communications

Genome studies and molecular genetics: understanding the functional genome based on the rice model

(2013) Qifa Zhang et al.   CURRENT OPINION IN PLANT BIOLOGY

Characterization of a Purine Permease Family GeneOsPUP7Involved in Growth and Development Control in Rice

(2013) Zhuyun Qi et al.   Journal of Integrative Plant Biology

Mapping QTLs for Traits Related to Salinity Tolerance at Seedling Stage of Rice (Oryza sativa L.): An Agrigenomics Study of an Iranian Rice Population

(2013) Khadijeh Ghomi et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Distinctive expression patterns and roles of the miRNA393/TIR1 homolog module in regulating flag leaf inclination and primary and crown root growth in rice (Oryza sativa)

(2012) Hongwu Bian et al.   NEW PHYTOLOGIST

SCARECROW Has a SHORT-ROOT-Independent Role in Modulating the Sugar Response1

(2012) H. Cui et al.   PLANT PHYSIOLOGY

OsTIR1 and OsAFB2 Downregulation via OsmiR393 Overexpression Leads to More Tillers, Early Flowering and Less Tolerance to Salt and Drought in Rice

(2012) Kuaifei Xia et al.   PLoS One

Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy

(2011) I. Letunic et al.   NUCLEIC ACIDS RESEARCH

The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling

(2011) Yuka Kitomi et al.   PLANT JOURNAL

Overexpression of type-A rice response regulators, OsRR3 and OsRR5, results in lower sensitivity to cytokinins

(2010) X. Cheng et al.   GENETICS AND MOLECULAR RESEARCH

OsCAND1 Is Required for Crown Root Emergence in Rice

(2010) Xiao-Fei Wang et al.   Molecular Plant

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

The WUSCHEL-Related Homeobox Gene WOX11 Is Required to Activate Shoot-Borne Crown Root Development in Rice

(2009) Y. Zhao et al.   PLANT CELL

A ricetryptophan deficient dwarfmutant,tdd1,contains a reduced level of indole acetic acid and develops abnormal flowers and organless embryos

(2009) Takashi Sazuka et al.   PLANT JOURNAL

Cytokinin and auxin interaction in root stem-cell specification during early embryogenesis

(2008) Bruno Müller et al.   NATURE

Characteristic and Expression Analysis of a Metallothionein Gene, OsMT2b, Down-Regulated by Cytokinin Suggests Functions in Root Development and Seed Embryo Germination of Rice

(2008) J. Yuan et al.   PLANT PHYSIOLOGY