CRISPR-Cas Diversity in Clinical Salmonella enterica Serovar Typhi Isolates from South Asian Countries

Emergence of Extensively Drug-Resistant Salmonella Typhi Infections Among Travelers to or from Pakistan — United States, 2016–2018

(2019) Kevin Chatham-Stephens et al.   MMWR-MORBIDITY AND MORTALITY WEEKLY REPORT

The global burden of typhoid and paratyphoid fevers: a systematic analysis for the Global Burden of Disease Study 2017

(2019) Jeffrey D Stanaway et al.   LANCET INFECTIOUS DISEASES

Origins and evolution of CRISPR-Cas systems

(2019) Eugene V. Koonin et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Analysis of isolates from Bangladesh highlights multiple ways to carry resistance genes in Salmonella Typhi

(2019) Nicholas Costa Barroso Lima et al.   BMC GENOMICS

SHERLOCK: nucleic acid detection with CRISPR nucleases

(2019) Max J. Kellner et al.   Nature Protocols

CRISPRCasdb a successor of CRISPRdb containing CRISPR arrays and cas genes from complete genome sequences, and tools to download and query lists of repeats and spacers

(2019) Christine Pourcel et al.   NUCLEIC ACIDS RESEARCH

Molecular mechanism of azithromycin resistance among typhoidal Salmonella strains in Bangladesh identified through passive pediatric surveillance

(2019) Yogesh Hooda et al.   PLoS Neglected Tropical Diseases

Azithromycin Resistance in Clinical Isolates of Salmonella enterica Serovars Typhi and Paratyphi in Bangladesh

(2018) Sunjukta Ahsan et al.   Microbial Drug Resistance

CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins

(2018) David Couvin et al.   NUCLEIC ACIDS RESEARCH

CRISPR-Cas12a target binding unleashes indiscriminate single-stranded DNase activity

(2018) Janice S. Chen et al.   SCIENCE

Emergence of an Extensively Drug-Resistant Salmonella enterica Serovar Typhi Clone Harboring a Promiscuous Plasmid Encoding Resistance to Fluoroquinolones and Third-Generation Cephalosporins

(2018) Elizabeth J. Klemm et al.   mBio

Laboratory and molecular surveillance of paediatric typhoidal Salmonella in Nepal: Antimicrobial resistance and implications for vaccine policy

(2018) Carl D. Britto et al.   PLoS Neglected Tropical Diseases

Salmonella enterica Serovar Typhi in Bangladesh: Exploration of Genomic Diversity and Antimicrobial Resistance

(2018) Arif M. Tanmoy et al.   mBio

A systematic review of antimicrobial resistance in Salmonella enterica serovar Typhi, the etiological agent of typhoid

(2018) Carl D. Britto et al.   PLoS Neglected Tropical Diseases

Progress in Typhoid Fever Epidemiology

(2018) John A Crump   CLINICAL INFECTIOUS DISEASES

Correlation between phenotypic antibiotic susceptibility and the resistome in Pseudomonas aeruginosa

(2017) Magali Jaillard et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

CRISPR-Cas system presents multiple transcriptional units including antisense RNAs that are expressed in minimal medium and upregulated by pH in Salmonella enterica serovar Typhi

(2017) Liliana Medina-Aparicio et al.   MICROBIOLOGY-SGM

Degradation of Phage Transcripts by CRISPR-Associated RNases Enables Type III CRISPR-Cas Immunity

(2016) Wenyan Jiang et al.   CELL

Identifying and Visualizing Functional PAM Diversity across CRISPR-Cas Systems

(2016) Ryan T. Leenay et al.   MOLECULAR CELL

An extended genotyping framework for Salmonella enterica serovar Typhi, the cause of human typhoid

(2016) Vanessa K. Wong et al.   Nature Communications

Anti-cas spacers in orphan CRISPR4 arrays prevent uptake of active CRISPR–Cas I-F systems

(2016) Cristóbal Almendros et al.   Nature Microbiology

Characterization and evolution of Salmonella CRISPR-Cas systems

(2015)   MICROBIOLOGY-SGM

Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events

(2015) Vanessa K Wong et al.   NATURE GENETICS

An updated evolutionary classification of CRISPR–Cas systems

(2015) Kira S. Makarova et al.   NATURE REVIEWS MICROBIOLOGY

Polymorphism of CRISPR shows separated natural groupings ofShigellasubtypes and evidence of horizontal transfer of CRISPR

(2015) Chaojie Yang et al.   RNA Biology

Phylogenetic Distribution of CRISPR-Cas Systems in Antibiotic-Resistant Pseudomonas aeruginosa

(2015) Alex van Belkum et al.   mBio

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

The Role of CRISPR-Cas Systems in Virulence of Pathogenic Bacteria

(2014) R. Louwen et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

A CRISPR-Cas system enhances envelope integrity mediating antibiotic resistance and inflammasome evasion

(2014) T. R. Sampson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

CRISPR Is an Optimal Target for the Design of Specific PCR Assays for Salmonella enterica Serotypes Typhi and Paratyphi A

(2014) Laetitia Fabre et al.   PLoS Neglected Tropical Diseases

CARF and WYL domains: ligand-binding regulators of prokaryotic defense systems

(2014) Kira S. Makarova et al.   Frontiers in Genetics

The Genomic Blueprint of Salmonella enterica subspecies enterica serovar Typhi P-stx-12

(2013) Su Yean Ong et al.   Standards in Genomic Sciences

A novel link between Campylobacter jejuni bacteriophage defence, virulence and Guillain–Barré syndrome

(2012) R. Louwen et al.   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Correction: CRISPR Typing and Subtyping for Improved Laboratory Surveillance of Salmonella Infections

(2012) Laëtitia Fabre et al.   PLoS One

The CRISPR/Cas Immune System Is an Operon Regulated by LeuO, H-NS, and Leucine-Responsive Regulatory Protein in Salmonella enterica Serovar Typhi

(2011) L. Medina-Aparicio et al.   JOURNAL OF BACTERIOLOGY

Evolution and classification of the CRISPR–Cas systems

(2011) Kira S. Makarova et al.   NATURE REVIEWS MICROBIOLOGY

Diversity of CRISPR loci in Escherichia coli

(2010)   MICROBIOLOGY-SGM

The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA

(2010) Josiane E. Garneau et al.   NATURE

The Small, Slow and Specialized CRISPR and Anti-CRISPR of Escherichia and Salmonella

(2010) Marie Touchon et al.   PLoS One

Multidrug-Resistant Enterococci Lack CRISPR-cas

(2010) K. L. Palmer et al.   mBio

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

CRISPR Interference Limits Horizontal Gene Transfer in Staphylococci by Targeting DNA

(2008) Luciano A. Marraffini et al.   SCIENCE