Evidence for the placenta-brain axis: multi-omic kernel aggregation predicts intellectual and social impairment in children born extremely preterm

The placenta‐brain‐axis

(2020) Cheryl S. Rosenfeld   JOURNAL OF NEUROSCIENCE RESEARCH

Neurodevelopmental Outcomes of Prenatal Preeclampsia Exposure

(2020) Serena B. Gumusoglu et al.   TRENDS IN NEUROSCIENCES

Hyperactivated PTP1B phosphatase in parvalbumin neurons alters anterior cingulate inhibitory circuits and induces autism-like behaviors

(2020) Li Zhang et al.   Nature Communications

De novo variants in MPP5 cause global developmental delay and behavioral changes

(2020) Noelle Sterling et al.   HUMAN MOLECULAR GENETICS

A role for microRNAs in the epigenetic control of sexually dimorphic gene expression in the human placenta

(2020) Lauren A Eaves et al.   Epigenomics

Identification of common genetic risk variants for autism spectrum disorder

(2019) Jakob Grove et al.   NATURE GENETICS

Guidance for DNA methylation studies: statistical insights from the Illumina EPIC array

(2019) Georgina Mansell et al.   BMC GENOMICS

Trans Effects on Gene Expression Can Drive Omnigenic Inheritance

(2019) Xuanyao Liu et al.   CELL

Epigenome-wide DNA methylation in placentas from preterm infants: association with maternal socioeconomic status

(2019) Hudson P. Santos et al.   Epigenetics

The placenta as a window to the brain: A review on the role of placental markers in prenatal programming of neurodevelopment

(2019) Philemon Dauda Shallie et al.   INTERNATIONAL JOURNAL OF DEVELOPMENTAL NEUROSCIENCE

WebGestalt 2019: gene set analysis toolkit with revamped UIs and APIs

(2019) Yuxing Liao et al.   NUCLEIC ACIDS RESEARCH

New insights into DNA methylation signatures: SMARCA2 variants in Nicolaides-Baraitser syndrome

(2019) Eric Chater-Diehl et al.   BMC Medical Genomics

Associations between placental CpG methylation of metastable epialleles and childhood body mass index across ages one, two and ten in the Extremely Low Gestational Age Newborns (ELGAN) cohort

(2019) Jeliyah Clark et al.   Epigenetics

Reliable Gene Expression Profiling from Small and Hematoxylin and Eosin–Stained Clinical Formalin-Fixed, Paraffin-Embedded Specimens Using the HTG EdgeSeq Platform

(2019) Zhenhao Qi et al.   JOURNAL OF MOLECULAR DIAGNOSTICS

Paralog Studies Augment Gene Discovery: DDX and DHX Genes

(2019) Ingrid Paine et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Autism spectrum disorder polygenic scores are associated with every day executive function in children admitted for clinical assessment

(2019) Tonje Torske et al.   Autism Research

Placental Serotonin Signaling, Pregnancy Outcomes, and Regulation of Fetal Brain Development

(2019) Cheryl S Rosenfeld   BIOLOGY OF REPRODUCTION

Integrative transcriptome imputation reveals tissue-specific and shared biological mechanisms mediating susceptibility to complex traits

(2019) Wen Zhang et al.   Nature Communications

Psychiatric Genomics: An Update and an Agenda

(2018) Patrick F. Sullivan et al.   AMERICAN JOURNAL OF PSYCHIATRY

RnaSeqSampleSize: real data based sample size estimation for RNA sequencing

(2018) Shilin Zhao et al.   BMC BIOINFORMATICS

Placental CpG methylation of HPA-axis genes is associated with cognitive impairment at age 10 among children born extremely preterm

(2018) C.J. Meakin et al.   HORMONES AND BEHAVIOR

Consistent inverse correlation between DNA methylation of the first intron and gene expression across tissues and species

(2018) Dafni Anastasiadi et al.   Epigenetics & Chromatin

Single-cell RNA-seq reveals the diversity of trophoblast subtypes and patterns of differentiation in the human placenta 

(2018) Yawei Liu et al.   CELL RESEARCH

Diversity in human placental microvascular endothelial cells and macrovascular endothelial cells

(2018) Xiaojie Huang et al.   CYTOKINE

Prevalence of Autism Spectrum Disorder in Preterm Infants: A Meta-analysis

(2018) Sachin Agrawal et al.   PEDIATRICS

Brain-Derived Neurotrophic Factor (BDNF) Regulates Rab5-Positive Early Endosomes in Hippocampal Neurons to Induce Dendritic Branching

(2018) Guillermo Moya-Alvarado et al.   Frontiers in Cellular Neuroscience

Double-slit photoelectron interference in strong-field ionization of the neon dimer

(2018) Maksim Kunitski et al.   Nature Communications

Genome-wide quantification of the effects of DNA methylation on human gene regulation

(2018) Amanda J Lea et al.   eLife

A loss-of-function homozygous mutation in DDX59 implicates a conserved DEAD-box RNA helicase in nervous system development and function

(2017) Vincenzo Salpietro et al.   HUMAN MUTATION

Social Responsiveness Scale Assessment of the Preterm Behavioral Phenotype in 10-Year-Olds Born Extremely Preterm

(2017) Steven J. Korzeniewski et al.   JOURNAL OF DEVELOPMENTAL AND BEHAVIORAL PEDIATRICS

Cutting Edge: Fetal/Placental Type I IFN Can Affect Maternal Survival and Fetal Viral Load during Viral Infection

(2017) Karen Racicot et al.   JOURNAL OF IMMUNOLOGY

Intrauterine growth restriction and placental gene expression in severe preeclampsia, comparing early-onset and late-onset forms

(2017) Jaana Nevalainen et al.   JOURNAL OF PERINATAL MEDICINE

Salmon provides fast and bias-aware quantification of transcript expression

(2017) Rob Patro et al.   NATURE METHODS

STAT2 is an essential adaptor in USP18-mediated suppression of type I interferon signaling

(2017) Kei-ichiro Arimoto et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

The Encyclopedia of DNA elements (ENCODE): data portal update

(2017) Carrie A Davis et al.   NUCLEIC ACIDS RESEARCH

Prevalence of Autism Spectrum Disorders with and without Intellectual Disability by Gestational Age at Birth in the Stockholm Youth Cohort: a Register Linkage Study

(2017) Sherlly Xie et al.   PAEDIATRIC AND PERINATAL EPIDEMIOLOGY

Child neurodevelopmental outcomes following preterm and term birth: What can the placenta tell us?

(2017) Nicolette A. Hodyl et al.   PLACENTA

STAT2 is an essential adaptor in USP18-mediated suppression of type I interferon signaling

(2017) Kei-ichiro Arimoto et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Genetic epidemiology and Mendelian randomization for informing disease therapeutics: Conceptual and methodological challenges

(2017) Lavinia Paternoster et al.   PLoS Genetics

Integrating Clinical and Multiple Omics Data for Prognostic Assessment across Human Cancers

(2017) Bin Zhu et al.   Scientific Reports

NewSMARCA2mutation in a patient with Nicolaides-Baraitser syndrome and myoclonic astatic epilepsy

(2016) S. Tang et al.   AMERICAN JOURNAL OF MEDICAL GENETICS PART A

Robust hyperparameter estimation protects against hypervariable genes and improves power to detect differential expression

(2016) Belinda Phipson et al.   Annals of Applied Statistics

Prevalence and associated features of autism spectrum disorder in extremely low gestational age newborns at age 10 years

(2016) Robert M. Joseph et al.   Autism Research

Regions of variable DNA methylation in human placenta associated with newborn neurobehavior

(2016) Alison G. Paquette et al.   Epigenetics

Integrative approaches for large-scale transcriptome-wide association studies

(2016) Alexander Gusev et al.   NATURE GENETICS

Neurocognitive and Academic Outcomes at Age 10 Years of Extremely Preterm Newborns

(2016) R. M. Joseph et al.   PEDIATRICS

Epithelial-mesenchymal transition during extravillous trophoblast differentiation

(2016) Jessica E. Davies et al.   Cell Adhesion & Migration

Placental methylome analysis from a prospective autism study

(2016) Diane I. Schroeder et al.   Molecular Autism

Meta-Analysis of Tourette Syndrome and Attention Deficit Hyperactivity Disorder Provides Support for a Shared Genetic Basis

(2016) Fotis Tsetsos et al.   Frontiers in Neuroscience

Functions of Rab Proteins at Presynaptic Sites

(2016) Beyenech Binotti et al.   Cells

Preeclampsia, biomarkers, syncytiotrophoblast stress, and placental capacity

(2015) Christopher W.G. Redman et al.   AMERICAN JOURNAL OF OBSTETRICS AND GYNECOLOGY

The apical complex protein Pals1 is required to maintain cerebellar progenitor cells in a proliferative state

(2015) Jun Young Park et al.   DEVELOPMENT

A Selective Role for Lmo4 in Cue-Reward Learning

(2015) R. Maiya et al.   JOURNAL OF NEUROSCIENCE

Gene hunting in autism spectrum disorder: on the path to precision medicine

(2015) Daniel H Geschwind et al.   LANCET NEUROLOGY

Integrative analysis of 111 reference human epigenomes

(2015) Anshul Kundaje et al.   NATURE

A gene-based association method for mapping traits using reference transcriptome data

(2015) Eric R Gamazon et al.   NATURE GENETICS

Insights into Autism Spectrum Disorder Genomic Architecture and Biology from 71 Risk Loci

(2015) Stephan J. Sanders et al.   NEURON

The Placenta as a Mediator of Stress Effects on Neurodevelopmental Reprogramming

(2015) Stefanie L Bronson et al.   NEUROPSYCHOPHARMACOLOGY

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

LRP1B, BRD2 and CACNA1D: new candidate genes in fetal metabolic programming of newborns exposed to maternal hyperglycemia

(2015) Andrée-Anne Houde et al.   Epigenomics

Cell Specific eQTL Analysis without Sorting Cells

(2015) Harm-Jan Westra et al.   PLoS Genetics

qgraph: Network Visualizations of Relationships in Psychometric Data

(2015) Sacha Epskamp et al.   Journal of Statistical Software

The Diverse Genetic Landscape of Neurodevelopmental Disorders

(2014) Wen F. Hu et al.   Annual Review of Genomics and Human Genetics

Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays

(2014) Martin J. Aryee et al.   BIOINFORMATICS

Normalization of RNA-seq data using factor analysis of control genes or samples

(2014) Davide Risso et al.   NATURE BIOTECHNOLOGY

The Common Single-Nucleotide Polymorphism rs2681472 Is Associated With Early-Onset Preeclampsia in Northern Han Chinese Women

(2014) Ji-Peng Wan et al.   Reproductive Sciences

Mutations in DDX59 Implicate RNA Helicase in the Pathogenesis of Orofaciodigital Syndrome

(2013) Hanan E. Shamseldin et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Low-level processing of Illumina Infinium DNA Methylation BeadArrays

(2013) Timothy J. Triche et al.   NUCLEIC ACIDS RESEARCH

A placental sub-proteome: The apical plasma membrane of the syncytiotrophoblast

(2012) D.D. Vandré et al.   PLACENTA

Lmo4 in the Basolateral Complex of the Amygdala Modulates Fear Learning

(2012) Rajani Maiya et al.   PLoS One

Using control genes to correct for unwanted variation in microarray data

(2011) J. A. Gagnon-Bartsch et al.   BIOSTATISTICS

LMO4 functions as a co-activator of neurogenin 2 in the developing cortex

(2011) J. S. T. Asprer et al.   DEVELOPMENT

Ridge Regression and Other Kernels for Genomic Selection with R Package rrBLUP

(2011) Jeffrey B. Endelman   Plant Genome

Foxp2 Regulates Gene Networks Implicated in Neurite Outgrowth in the Developing Brain

(2011) Sonja C. Vernes et al.   PLoS Genetics

A genomic and proteomic investigation of the impact of preimplantation factor on human decidual cells

(2010) Michael J. Paidas et al.   AMERICAN JOURNAL OF OBSTETRICS AND GYNECOLOGY

A transcriptional profile of the decidua in preeclampsia

(2010) Mari Løset et al.   AMERICAN JOURNAL OF OBSTETRICS AND GYNECOLOGY

Sibling Recurrence and the Genetic Epidemiology of Autism

(2010) John N. Constantino et al.   AMERICAN JOURNAL OF PSYCHIATRY

Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis

(2010) Pan Du et al.   BMC BIOINFORMATICS

Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

(2010) James H Bullard et al.   BMC BIOINFORMATICS

Independent filtering increases detection power for high-throughput experiments

(2010) R. Bourgon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Time course analysis of RNA stability in human placenta

(2009) Isabelle Fajardy et al.   BMC MOLECULAR BIOLOGY

The ELGAN study of the brain and related disorders in extremely low gestational age newborns

(2009) T.M. O'Shea et al.   EARLY HUMAN DEVELOPMENT

Involvement of SMARCA2/BRM in the SWI/SNF chromatin-remodeling complex in schizophrenia

(2009) Minori Koga et al.   HUMAN MOLECULAR GENETICS

Intrauterine Growth Restriction Affects the Preterm Infant's Hippocampus

(2009) Gregory A Lodygensky et al.   PEDIATRIC RESEARCH