High-resolution transcriptional and morphogenetic profiling of cells from micropatterned human ESC gastruloid cultures
Published 2020 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
High-resolution transcriptional and morphogenetic profiling of cells from micropatterned human ESC gastruloid cultures
Authors
Keywords
-
Journal
eLife
Volume 9, Issue -, Pages -
Publisher
eLife Sciences Publications, Ltd
Online
2020-11-18
DOI
10.7554/elife.59445
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- CellPhoneDB: inferring cell–cell communication from combined expression of multi-subunit ligand–receptor complexes
- (2020) Mirjana Efremova et al. Nature Protocols
- A single-cell molecular map of mouse gastrulation and early organogenesis
- (2019) Blanca Pijuan-Sala et al. NATURE
- A wave of WNT signaling balanced by secreted inhibitors controls primitive streak formation in micropattern colonies of human embryonic stem cells
- (2019) Iain Martyn et al. DEVELOPMENT
- The emergent landscape of the mouse gut endoderm at single-cell resolution
- (2019) Sonja Nowotschin et al. NATURE
- Comprehensive Integration of Single-Cell Data
- (2019) Tim Stuart et al. CELL
- Self-organization of stem cells into embryos: A window on early mammalian development
- (2019) Marta N. Shahbazi et al. SCIENCE
- Mapping cell migrations and fates in a gastruloid model to the human primitive streak
- (2019) Iain Martyn et al. DEVELOPMENT
- Molecular architecture of lineage allocation and tissue organization in early mouse embryo
- (2019) Guangdun Peng et al. NATURE
- Controlled modelling of human epiblast and amnion development using stem cells
- (2019) Yi Zheng et al. NATURE
- In vitro culture of cynomolgus monkey embryos beyond early gastrulation
- (2019) Huaixiao Ma et al. SCIENCE
- Dissecting primate early post-implantation development using long-term in vitro embryo culture
- (2019) Yuyu Niu et al. SCIENCE
- Dissecting the dynamics of signaling events in the BMP, WNT, and NODAL cascade during self-organized fate patterning in human gastruloids
- (2019) Sapna Chhabra et al. PLOS BIOLOGY
- Single-cell RNA sequencing reveals regulatory mechanism for trophoblast cell-fate divergence in human peri-implantation conceptuses
- (2019) Bo Lv et al. PLOS BIOLOGY
- A developmental landscape of 3D-cultured human pre-gastrulation embryos
- (2019) Lifeng Xiang et al. NATURE
- Human Primordial Germ Cells Are Specified from Lineage-Primed Progenitors
- (2019) Di Chen et al. Cell Reports
- Integrating single-cell transcriptomic data across different conditions, technologies, and species
- (2018) Andrew Butler et al. NATURE BIOTECHNOLOGY
- Self-assembly of embryonic and two extra-embryonic stem cell types into gastrulating embryo-like structures
- (2018) Berna Sozen et al. NATURE CELL BIOLOGY
- Deconstructing and reconstructing the mouse and human early embryo
- (2018) Marta N. Shahbazi et al. NATURE CELL BIOLOGY
- Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis
- (2018) Jeffrey A. Farrell et al. SCIENCE
- Single-cell RNA sequencing reveals metallothionein heterogeneity during hESC differentiation to definitive endoderm
- (2018) Junjie Lu et al. Stem Cell Research
- Micropattern differentiation of mouse pluripotent stem cells recapitulates embryo regionalized cell fate patterning
- (2018) Sophie M Morgani et al. eLife
- Self-organization of a human organizer by combined Wnt and Nodal signalling
- (2018) I. Martyn et al. NATURE
- Committing the primordial germ cell: An updated molecular perspective
- (2018) Haihan Tan et al. Wiley Interdisciplinary Reviews-Systems Biology and Medicine
- Opening the black box: Stem cell–based modeling of human post-implantation development
- (2018) Kenichiro Taniguchi et al. JOURNAL OF CELL BIOLOGY
- Multi-axial self-organization properties of mouse embryonic stem cells into gastruloids
- (2018) Leonardo Beccari et al. NATURE
- Forces driving cell sorting in the amphibian embryo
- (2017) Rudolf Winklbauer et al. MECHANISMS OF DEVELOPMENT
- Assembly of embryonic and extraembryonic stem cells to mimic embryogenesis in vitro
- (2017) Sarah Ellys Harrison et al. SCIENCE
- Single-Cell RNA-Seq Reveals Lineage and X Chromosome Dynamics in Human Preimplantation Embryos
- (2016) Sophie Petropoulos et al. CELL
- EMT: 2016
- (2016) M. Angela Nieto et al. CELL
- Mapping the Pairwise Choices Leading from Pluripotency to Human Bone, Heart, and Other Mesoderm Cell Types
- (2016) Kyle M. Loh et al. CELL
- A Balance between Secreted Inhibitors and Edge Sensing Controls Gastruloid Self-Organization
- (2016) Fred Etoc et al. DEVELOPMENTAL CELL
- The Germ Cell Fate of Cynomolgus Monkeys Is Specified in the Nascent Amnion
- (2016) Kotaro Sasaki et al. DEVELOPMENTAL CELL
- Self-organization of the in vitro attached human embryo
- (2016) Alessia Deglincerti et al. NATURE
- A developmental coordinate of pluripotency among mice, monkeys and humans
- (2016) Tomonori Nakamura et al. NATURE
- Self-organization of the human embryo in the absence of maternal tissues
- (2016) Marta N. Shahbazi et al. NATURE CELL BIOLOGY
- Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq
- (2016) I. Tirosh et al. SCIENCE
- destiny: diffusion maps for large-scale single-cell data in R
- (2015) Philipp Angerer et al. BIOINFORMATICS
- Defining the three cell lineages of the human blastocyst by single-cell RNA-seq
- (2015) P. Blakeley et al. DEVELOPMENT
- ClearVolume: open-source live 3D visualization for light-sheet microscopy
- (2015) Loic A Royer et al. NATURE METHODS
- Expression and Potential Role of GATA Factors in Trophoblast Development
- (2015) Hanako BAI et al. JOURNAL OF REPRODUCTION AND DEVELOPMENT
- The cellular basis of tissue separation
- (2014) F. Fagotto DEVELOPMENT
- Symmetry breaking, germ layer specification and axial organisation in aggregates of mouse embryonic stem cells
- (2014) S. C. van den Brink et al. DEVELOPMENT
- Cell competition: how to eliminate your neighbours
- (2014) M. Amoyel et al. DEVELOPMENT
- A method to recapitulate early embryonic spatial patterning in human embryonic stem cells
- (2014) Aryeh Warmflash et al. NATURE METHODS
- Ephrin-Eph signaling in embryonic tissue separation
- (2014) Francois Fagotto et al. Cell Adhesion & Migration
- Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool
- (2013) Edward Y Chen et al. BMC BIOINFORMATICS
- Mesp1 Patterns Mesoderm into Cardiac, Hematopoietic, or Skeletal Myogenic Progenitors in a Context-Dependent Manner
- (2013) Sunny Sun-Kin Chan et al. Cell Stem Cell
- A Molecular Base for Cell Sorting at Embryonic Boundaries: Contact Inhibition of Cadherin Adhesion by Ephrin/Eph-Dependent Contractility
- (2013) François Fagotto et al. DEVELOPMENTAL CELL
- Rapid and Efficient Differentiation of Human Pluripotent Stem Cells into Intermediate Mesoderm That Forms Tubules Expressing Kidney Proximal Tubular Markers
- (2013) A. Q. Lam et al. JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY
- Fiji: an open-source platform for biological-image analysis
- (2012) Johannes Schindelin et al. NATURE METHODS
- Gastrulation: Making and Shaping Germ Layers
- (2011) Lila Solnica-Krezel et al. Annual Review of Cell and Developmental Biology
- Self-Organization Phenomena in Embryonic Stem Cell-Derived Embryoid Bodies: Axis Formation and Breaking of Symmetry during Cardiomyogenesis
- (2011) Christiane Fuchs et al. CELLS TISSUES ORGANS
- Mouse primitive streak forms in situ by initiation of epithelial to mesenchymal transition without migration of a cell population
- (2011) Margot Williams et al. DEVELOPMENTAL DYNAMICS
- The T-box transcription factor Eomesodermin acts upstream of Mesp1 to specify cardiac mesoderm during mouse gastrulation
- (2011) Ita Costello et al. NATURE CELL BIOLOGY
- DLK1 Promotes Neurogenesis of Human and Mouse Pluripotent Stem Cell-Derived Neural Progenitors Via Modulating Notch and BMP Signalling
- (2011) Beata Surmacz et al. Stem Cell Reviews and Reports
- EphrinB/EphB Signaling Controls Embryonic Germ Layer Separation by Contact-Induced Cell Detachment
- (2011) Nazanin Rohani et al. PLOS BIOLOGY
- A Mesoderm-Derived Precursor for Mesenchymal Stem and Endothelial Cells
- (2010) Maxim A. Vodyanik et al. Cell Stem Cell
- Finite-size corrections to scaling behavior in sorted cell aggregates
- (2010) A. V. Klopper et al. EUROPEAN PHYSICAL JOURNAL E
- Making the blastocyst: lessons from the mouse
- (2010) Katie Cockburn et al. JOURNAL OF CLINICAL INVESTIGATION
- Making a commitment: cell lineage allocation and axis patterning in the early mouse embryo
- (2009) Sebastian J. Arnold et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Characterization of Gastrulation-Stage Progenitor Cells and Their Inhibitory Cross-Talk in Human Embryoid Bodies
- (2009) Oded Kopper et al. STEM CELLS
- Nodal Morphogens
- (2009) A. F. Schier Cold Spring Harbor Perspectives in Biology
- Wnt Signaling Mediates Self-Organization and Axis Formation in Embryoid Bodies
- (2008) Derk ten Berge et al. Cell Stem Cell
- Quantitative differences in tissue surface tension influence zebrafish germ layer positioning
- (2008) Eva‐Maria Schötz et al. HFSP Journal
- Tensile forces govern germ-layer organization in zebrafish
- (2008) M. Krieg et al. NATURE CELL BIOLOGY
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now