Hybrid genome assembly and functional annotation reveals insights on lipid biosynthesis of oleaginous native isolate Parachlorella kessleri, a potential industrial strain for production of biofuel precursors

Enhancing lipid productivity by modulating lipid catabolism using the CRISPR-Cas9 system in Chlamydomonas

(2020) Thu Ha Thi Nguyen et al.   JOURNAL OF APPLIED PHYCOLOGY

Nitrogen Deficiency-Dependent Abiotic Stress Enhances Carotenoid Production in Indigenous Green Microalga Scenedesmus rubescens KNUA042, for Use as a Potential Resource of High Value Products

(2020) Seung-Woo Jo et al.   Sustainability

Evaluation of strategies for the assembly of diverse bacterial genomes using MinION long-read sequencing

(2019) Sarah Goldstein et al.   BMC GENOMICS

Next-Generation Sequencing and Emerging Technologies

(2019) Kishore Kumar et al.   SEMINARS IN THROMBOSIS AND HEMOSTASIS

Molecular profiling of an oleaginous trebouxiophycean alga Parachlorella kessleri subjected to nutrient deprivation for enhanced biofuel production

(2019) Kashif Mohd Shaikh et al.   Biotechnology for Biofuels

Correction: Nitrogen starvation induces distinct photosynthetic responses and recovery dynamics in diatoms and prasinophytes

(2019) Justin D. Liefer et al.   PLoS One

Effect of Single and Combined Expression of Lysophosphatidic Acid Acyltransferase, Glycerol-3-Phosphate Acyltransferase, and Diacylglycerol Acyltransferase on Lipid Accumulation and Composition in Neochloris oleoabundans

(2019) Camilo F. Muñoz et al.   Frontiers in Plant Science

iPath3.0: interactive pathways explorer v3

(2018) Youssef Darzi et al.   NUCLEIC ACIDS RESEARCH

Rapid Low-Cost Assembly of the Drosophila melanogaster Reference Genome Using Low-Coverage, Long-Read Sequencing

(2018) Edwin A. Solares et al.   G3-Genes Genomes Genetics

Targeted knockout of phospholipase A2 to increase lipid productivity in Chlamydomonas reinhardtii for biodiesel production

(2018) Ye Sol Shin et al.   BIORESOURCE TECHNOLOGY

De novo assembly of middle-sized genome using MinION and Illumina sequencers

(2018) Ryuhei Minei et al.   BMC GENOMICS

Accelerated triacylglycerol production without growth inhibition by overexpression of a glycerol-3-phosphate acyltransferase in the unicellular red alga Cyanidioschyzon merolae

(2018) Satoshi Fukuda et al.   Scientific Reports

Accelerated triacylglycerol production and altered fatty acid composition in oleaginous microalga Neochloris oleoabundans by overexpression of diacylglycerol acyltransferase 2

(2017) Paeka Klaitong et al.   Microbial Cell Factories

Lipid production in Nannochloropsis gaditana is doubled by decreasing expression of a single transcriptional regulator

(2017) Imad Ajjawi et al.   NATURE BIOTECHNOLOGY

Nitrogen Starvation Impacts the Photosynthetic Performance of Porphyridium cruentum as Revealed by Chlorophyll a Fluorescence

(2017) Long-Sheng Zhao et al.   Scientific Reports

Highly efficient lipid production in the green alga Parachlorella kessleri: draft genome and transcriptome endorsed by whole-cell 3D ultrastructure

(2016) Shuhei Ota et al.   Biotechnology for Biofuels

A type 2 diacylglycerol acyltransferase accelerates the triacylglycerol biosynthesis in heterokont oleaginous microalga Nannochloropsis oceanica

(2016) Da-Wei Li et al.   JOURNAL OF BIOTECHNOLOGY

BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences

(2016) Minoru Kanehisa et al.   JOURNAL OF MOLECULAR BIOLOGY

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

DBG2OLC: Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation Sequencing Technologies

(2016) Chengxi Ye et al.   Scientific Reports

Accumulation of energy reserves in algae: From cell cycles to biotechnological applications

(2015) Milada Vitova et al.   BIOTECHNOLOGY ADVANCES

RNA-Seq transcriptomic analysis with Bag2D software identifies key pathways enhancing lipid yield in a high lipid-producing mutant of the non-model green alga Dunaliella tertiolecta

(2015) Lina Yao et al.   Biotechnology for Biofuels

Transcriptional program for nitrogen starvation-induced lipid accumulation in Chlamydomonas reinhardtii

(2015) Adrián López García de Lomana et al.   Biotechnology for Biofuels

Oil Accumulation by the Oleaginous DiatomFistulifera solarisas Revealed by the Genome and Transcriptome

(2015) Tsuyoshi Tanaka et al.   PLANT CELL

Metabolism of acyl-lipids inChlamydomonas reinhardtii

(2015) Yonghua Li-Beisson et al.   PLANT JOURNAL

Next generation sequencing technology: Advances and applications

(2014) H.P.J. Buermans et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE

Poretools: a toolkit for analyzing nanopore sequence data

(2014) N. J. Loman et al.   BIOINFORMATICS

Nitrogen stress triggered biochemical and morphological changes in the microalgae Scenedesmus sp. CCNM 1077

(2014) Imran Pancha et al.   BIORESOURCE TECHNOLOGY

Superior triacylglycerol (TAG) accumulation in starchless mutants of Scenedesmus obliquus: (II) evaluation of TAG yield and productivity in controlled photobioreactors

(2014) Guido Breuer et al.   Biotechnology for Biofuels

Superior triacylglycerol (TAG) accumulation in starchless mutants of Scenedesmus obliquus: (I) mutant generation and characterization

(2014) Lenny de Jaeger et al.   Biotechnology for Biofuels

Choreography of Transcriptomes and Lipidomes of Nannochloropsis Reveals the Mechanisms of Oil Synthesis in Microalgae

(2014) J. Li et al.   PLANT CELL

Molecular and cellular mechanisms of neutral lipid accumulation in diatom following nitrogen deprivation

(2013) Zhi-Kai Yang et al.   Biotechnology for Biofuels

De novo transcriptome profiling uncovers a drastic downregulation of photosynthesis upon nitrogen deprivation in the nonmodel green alga Botryosphaerella sudeticus

(2013) Deying Sun et al.   BMC GENOMICS

Proteomics to reveal metabolic network shifts towards lipid accumulation following nitrogen deprivation in the diatom Phaeodactylum tricornutum

(2013) Zhi-Kai Yang et al.   JOURNAL OF APPLIED PHYCOLOGY

Chromosome Scale Genome Assembly and Transcriptome Profiling of Nannochloropsis gaditana in Nitrogen Depletion

(2013) Elisa Corteggiani Carpinelli et al.   Molecular Plant

The microalgaParachlorella kessleri--A novel highly efficient lipid producer

(2012) Xiuling Li et al.   BIOTECHNOLOGY AND BIOENGINEERING

Potential role of multiple carbon fixation pathways during lipid accumulation in Phaeodactylum tricornutum

(2012) Jacob Valenzuela et al.   Biotechnology for Biofuels

Transcriptomic analysis of the oleaginous microalga Neochloris oleoabundans reveals metabolic insights into triacylglyceride accumulation

(2012) Hamid Rismani-Yazdi et al.   Biotechnology for Biofuels

In SilicoIdentification and Comparative Genomics of Candidate Genes Involved in Biosynthesis and Accumulation of Seed Oil in Plants

(2012) Arti Sharma et al.   COMPARATIVE AND FUNCTIONAL GENOMICS

Lipid metabolism in microalgae distinguishes itself

(2012) Bensheng Liu et al.   CURRENT OPINION IN BIOTECHNOLOGY

High Lipid Induction in Microalgae for Biodiesel Production

(2012) Kalpesh K. Sharma et al.   Energies

Fluxomics - connecting ‘omics analysis and phenotypes

(2012) Gal Winter et al.   ENVIRONMENTAL MICROBIOLOGY

Three Acyltransferases and Nitrogen-responsive Regulator Are Implicated in Nitrogen Starvation-induced Triacylglycerol Accumulation inChlamydomonas

(2012) Nanette R. Boyle et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

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(2012) Michael D. Guiry   JOURNAL OF PHYCOLOGY

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(2012) Christian J. A. Sigrist et al.   NUCLEIC ACIDS RESEARCH

Metabolic and gene expression changes triggered by nitrogen deprivation in the photoautotrophically grown microalgae Chlamydomonas reinhardtii and Coccomyxa sp. C-169

(2012) Joseph Msanne et al.   PHYTOCHEMISTRY

Phospholipid:Diacylglycerol Acyltransferase Is a Multifunctional Enzyme Involved in Membrane Lipid Turnover and Degradation While Synthesizing Triacylglycerol in the Unicellular Green Microalga Chlamydomonas reinhardtii

(2012) K. Yoon et al.   PLANT CELL

DNA barcode and lipid analysis of new marine algae potential for biofuel

(2012) Irshad Ahmad et al.   Algal Research-Biomass Biofuels and Bioproducts

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

A novel hybrid gene prediction method employing protein multiple sequence alignments

(2011) Oliver Keller et al.   BIOINFORMATICS

Transcriptome sequencing and annotation of the microalgae Dunaliella tertiolecta: Pathway description and gene discovery for production of next-generation biofuels

(2011) Hamid Rismani-Yazdi et al.   BMC GENOMICS

Metabolic engineering of algae for fourth generation biofuels production

(2011) Jing Lü et al.   Energy & Environmental Science

Unraveling algal lipid metabolism: Recent advances in gene identification

(2010) Inna Khozin-Goldberg et al.   BIOCHIMIE

Scaffolding pre-assembled contigs using SSPACE

(2010) Marten Boetzer et al.   BIOINFORMATICS

Genetic Engineering of Algae for Enhanced Biofuel Production

(2010) Randor Radakovits et al.   EUKARYOTIC CELL

Network-based function prediction and interactomics: The case for metabolic enzymes

(2010) S.C. Janga et al.   METABOLIC ENGINEERING

Characterization of de novo transcriptome for waterhemp (Amaranthus tuberculatus) using GS-FLX 454 pyrosequencing and its application for studies of herbicide target-site genes

(2010) Chance W Riggins et al.   PEST MANAGEMENT SCIENCE

TheChlorella variabilisNC64A Genome Reveals Adaptation to Photosymbiosis, Coevolution with Viruses, and Cryptic Sex

(2010) Guillaume Blanc et al.   PLANT CELL

An Outlook on Microalgal Biofuels

(2010) R. H. Wijffels et al.   SCIENCE

A genome-wide survey of maize lipid-related genes: candidate genes mining, digital gene expression profiling and co-location with QTL for maize kernel oil

(2010) Lin Li et al.   Science China-Life Sciences

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(2010) Evan Stephens et al.   TRENDS IN PLANT SCIENCE

The promise and challenges of microalgal-derived biofuels

(2009) Philip T. Pienkos et al.   Biofuels Bioproducts & Biorefining-Biofpr

Engineering algae for biohydrogen and biofuel production

(2009) Laura L Beer et al.   CURRENT OPINION IN BIOTECHNOLOGY

New microbial fuels: a biotech perspective

(2009) Mathew A Rude et al.   CURRENT OPINION IN MICROBIOLOGY

Enhancement of lipid production using biochemical, genetic and transcription factor engineering approaches

(2009) Noémie Manuelle Dorval Courchesne et al.   JOURNAL OF BIOTECHNOLOGY

Defossiling Fuel: How Synthetic Biology Can Transform Biofuel Production

(2008) David F. Savage et al.   ACS Chemical Biology

Microalgae for oil: Strain selection, induction of lipid synthesis and outdoor mass cultivation in a low-cost photobioreactor

(2008) Liliana Rodolfi et al.   BIOTECHNOLOGY AND BIOENGINEERING

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

An Improved General Amino Acid Replacement Matrix

(2008) S. Q. Le et al.   MOLECULAR BIOLOGY AND EVOLUTION

Microalgal triacylglycerols as feedstocks for biofuel production: perspectives and advances

(2008) Qiang Hu et al.   PLANT JOURNAL

Plants to power: bioenergy to fuel the future

(2008) Joshua S. Yuan et al.   TRENDS IN PLANT SCIENCE