Bud23 promotes the final disassembly of the small subunit Processome in Saccharomyces cerevisiae

90S pre-ribosome transformation into the primordial 40S subunit

(2020) Jingdong Cheng et al.   SCIENCE

Cryo-EM structure of 90S small ribosomal subunit precursors in transition states

(2020) Yifei Du et al.   SCIENCE

Assembly and early maturation of large subunit precursors

(2019) Malik Chaker-Margot et al.   RNA

Molecular mechanism of the RNA helicase DHX37 and its activation by UTP14 in ribosome biogenesis

(2019) Franziska Boneberg et al.   RNA

Conformational switches control early maturation of the eukaryotic small ribosomal subunit

(2019) Mirjam Hunziker et al.   eLife

A kinase-dependent checkpoint prevents escape of immature ribosomes into the translating pool

(2019) Melissa D. Parker et al.   PLOS BIOLOGY

Assembly and structure of the SSU processome — a nucleolar precursor of the small ribosomal subunit

(2018) Jonas Barandun et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Maturation of the 90S pre-ribosome requires Mrd1 dependent U3 snoRNA and 35S pre-rRNA structural rearrangements

(2018) Fredrik Lackmann et al.   NUCLEIC ACIDS RESEARCH

Structural and functional analysis of Utp24, an endonuclease for processing 18S ribosomal RNA

(2018) Weidong An et al.   PLoS One

Assembly of the small ribosomal subunit in yeast: mechanism and regulation

(2018) Malik Chaker-Margot   RNA

Utp14 interaction with the Small Subunit Processome

(2018) Joshua J Black et al.   RNA

Defining the physiological role of SRP in protein-targeting efficiency and specificity

(2018) Elizabeth A. Costa et al.   SCIENCE

Visualizing late states of human 40S ribosomal subunit maturation

(2018) Michael Ameismeier et al.   NATURE

Eurokaryotic Ribosome Assembly

(2018) Jochen Baßler et al.   Annual Review of Biochemistry

Ribosome assembly coming into focus

(2018) Sebastian Klinge et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Comparison of preribosomal RNA processing pathways in yeast, plant and human cells - focus on coordinated action of endo- and exoribonucleases

(2017) Rafal Tomecki et al.   FEBS LETTERS

3.2-Å-resolution structure of the 90S preribosome before A1 pre-rRNA cleavage

(2017) Jingdong Cheng et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Stepwise assembly of the earliest precursors of large ribosomal subunits in yeast

(2017) Wu Chen et al.   NUCLEIC ACIDS RESEARCH

Mpp10 represents a platform for the interaction of multiple factors within the 90S pre-ribosome

(2017) Bebiana Sá-Moura et al.   PLoS One

UCSF ChimeraX: Meeting modern challenges in visualization and analysis

(2017) Thomas D. Goddard et al.   PROTEIN SCIENCE

The SSU processome interactome in Saccharomyces cerevisiae reveals novel protein subcomplexes

(2017) Nicholas G. Vincent et al.   RNA

A Puzzle of Life: Crafting Ribosomal Subunits

(2017) Dieter Kressler et al.   TRENDS IN BIOCHEMICAL SCIENCES

3.2-Å-resolution structure of the 90S preribosome before A1 pre-rRNA cleavage

(2017) Jingdong Cheng et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Molecular architecture of the 90S small subunit pre-ribosome

(2017) Qi Sun et al.   eLife

BCFtools/RoH: a hidden Markov model approach for detecting autozygosity from next-generation sequencing data

(2016) Vagheesh Narasimhan et al.   BIOINFORMATICS

Stepwise and dynamic assembly of the earliest precursors of small ribosomal subunits in yeast

(2016) Liman Zhang et al.   GENES & DEVELOPMENT

Utp14 Recruits and Activates the RNA Helicase Dhr1 To Undock U3 snoRNA from the Preribosome

(2016) Jieyi Zhu et al.   MOLECULAR AND CELLULAR BIOLOGY

UtpA and UtpB chaperone nascent pre-ribosomal RNA and U3 snoRNA to initiate eukaryotic ribosome assembly

(2016) Mirjam Hunziker et al.   Nature Communications

The human 18S rRNA base methyltransferases DIMT1L and WBSCR22-TRMT112 but not rRNA modification are required for ribosome biogenesis

(2015) Christiane Zorbas et al.   MOLECULAR BIOLOGY OF THE CELL

Stage-specific assembly events of the 6-MDa small-subunit processome initiate eukaryotic ribosome biogenesis

(2015) Malik Chaker-Margot et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Stage-specific assembly events of the 6-MDa small-subunit processome initiate eukaryotic ribosome biogenesis

(2015) Malik Chaker-Margot et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

The DEAH-box Helicase Dhr1 Dissociates U3 from the Pre-rRNA to Promote Formation of the Central Pseudoknot

(2015) Richa Sardana et al.   PLOS BIOLOGY

A non-canonical mechanism for Crm1-export cargo complex assembly

(2015) Ute Fischer et al.   eLife

Physical and Functional Interaction between the Methyltransferase Bud23 and the Essential DEAH-Box RNA Helicase Ecm16

(2014) R. Sardana et al.   MOLECULAR AND CELLULAR BIOLOGY

Crucial role of the Rcl1p–Bms1p interaction for yeast pre-ribosomal RNA processing

(2014) Anna Delprato et al.   NUCLEIC ACIDS RESEARCH

Dominant Rio1 kinase/ATPase catalytic mutant induces trapping of late pre-40S biogenesis factors in 80S-like ribosomes

(2014) Sébastien Ferreira-Cerca et al.   NUCLEIC ACIDS RESEARCH

Secondary Structures of rRNAs from All Three Domains of Life

(2014) Anton S. Petrov et al.   PLoS One

Structural and functional studies of Bud23–Trm112 reveal 18S rRNAN7-G1575 methylation occurs on late 40S precursor ribosomes

(2014) Juliette Létoquart et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

WBSCR22/Merm1 is required for late nuclear pre-ribosomal RNA processing and mediates N7-methylation of G1639 in human 18S rRNA

(2014) Sara Haag et al.   RNA

Splicing proofreading at 5′ splice sites by ATPase Prp28p

(2013) Fei Yang et al.   NUCLEIC ACIDS RESEARCH

The Human WBSCR22 Protein Is Involved in the Biogenesis of the 40S Ribosomal Subunits in Mammalian Cells

(2013) Kadri Õunap et al.   PLoS One

Splicing fidelity

(2013) Prakash Koodathingal et al.   RNA Biology

The rRNA methyltransferase Bud23 shows functional interaction with components of the SSU processome and RNase MRP

(2013) R. Sardana et al.   RNA

Trm112 Is Required for Bud23-Mediated Methylation of the 18S rRNA at Position G1575

(2012) S. Figaro et al.   MOLECULAR AND CELLULAR BIOLOGY

The methyltransferase adaptor protein Trm112 is involved in biogenesis of both ribosomal subunits

(2012) Richa Sardana et al.   MOLECULAR BIOLOGY OF THE CELL

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

New phenotypes generated by the G57R mutation ofBUD23inSaccharomyces cerevisiae

(2012) Jyun-Liang Lin et al.   YEAST

Structure-Function Relationships of the G Domain, a Canonical Switch Motif

(2011) Alfred Wittinghofer et al.   Annual Review of Biochemistry

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

The initial U3 snoRNA:pre-rRNA base pairing interaction required for pre-18S rRNA folding revealed by in vivo chemical probing

(2011) Laura M. Dutca et al.   NUCLEIC ACIDS RESEARCH

A second base pair interaction between U3 small nucleolar RNA and the 5′-ETS region is required for early cleavage of the yeast pre-ribosomal RNA

(2011) Nathalie Marmier-Gourrier et al.   NUCLEIC ACIDS RESEARCH

The Structure of the Eukaryotic Ribosome at 3.0 A Resolution

(2011) A. Ben-Shem et al.   SCIENCE

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

An auxin-based degron system for the rapid depletion of proteins in nonplant cells

(2009) Kohei Nishimura et al.   NATURE METHODS

Bud23 Methylates G1575 of 18S rRNA and Is Required for Efficient Nuclear Export of Pre-40S Subunits

(2008) J. White et al.   MOLECULAR AND CELLULAR BIOLOGY