SkewIT: The Skew Index Test for large-scale GC Skew analysis of bacterial genomes

Human contamination in bacterial genomes has created thousands of spurious proteins

(2019) Florian P. Breitwieser et al.   GENOME RESEARCH

Evolutionary determinants of genome-wide nucleotide composition

(2018) Hongan Long et al.   Nature Ecology & Evolution

Quantitative analysis of correlation between AT and GC biases among bacterial genomes

(2017) Ge Zhang et al.   PLoS One

Human Contamination in Public Genome Assemblies

(2016) Kirill Kryukov et al.   PLoS One

Strand-biased cytosine deamination at the replication fork causes cytosine to thymine mutations inEscherichia coli

(2016) Ashok S. Bhagwat et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation

(2015) Nuala A. O'Leary et al.   NUCLEIC ACIDS RESEARCH

Large-scale contamination of microbial isolate genomes by Illumina PhiX control

(2015) Supratim Mukherjee et al.   Standards in Genomic Sciences

QUAST: quality assessment tool for genome assemblies

(2013) Alexey Gurevich et al.   BIOINFORMATICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Abundant Human DNA Contamination Identified in Non-Primate Genome Databases

(2011) Mark S. Longo et al.   PLoS One