Cortical morphology at birth reflects spatiotemporal patterns of gene expression in the fetal human brain

Heterogeneity in Brain Microstructural Development Following Preterm Birth

(2020) Ralica Dimitrova et al.   CEREBRAL CORTEX

Spatiotemporal Differences in the Regional Cortical Plate and Subplate Volume Growth during Fetal Development

(2020) Lana Vasung et al.   CEREBRAL CORTEX

‘Hierarchy’ in the organization of brain networks

(2020) Claus C. Hilgetag et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

BigBrain 3D atlas of cortical layers: Cortical and laminar thickness gradients diverge in sensory and motor cortices

(2020) Konrad Wagstyl et al.   PLOS BIOLOGY

Cortical Gray Matter Injury in Encephalopathy of Prematurity: Link to Neurodevelopmental Disorders

(2020) Bobbi Fleiss et al.   Frontiers in Neurology

Differential cortical microstructural maturation in the preterm human brain with diffusion kurtosis and tensor imaging

(2019) Minhui Ouyang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Early environmental influences on the development of children's brain structure and function

(2019) Patrícia M Miguel et al.   DEVELOPMENTAL MEDICINE AND CHILD NEUROLOGY

Single-cell genomics identifies cell type–specific molecular changes in autism

(2019) Dmitry Velmeshev et al.   SCIENCE

A Single-Cell Transcriptomic Atlas of Human Neocortical Development during Mid-gestation

(2019) Damon Polioudakis et al.   NEURON

Developmental topography of cortical thickness during infancy

(2019) Fan Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Human visual cortex is organized along two genetically opposed hierarchical gradients with unique developmental and evolutionary origins

(2019) Jesse Gomez et al.   PLOS BIOLOGY

Development and Arealization of the Cerebral Cortex

(2019) Cathryn R. Cadwell et al.   NEURON

Gradients of structure–function tethering across neocortex

(2019) Bertha Vázquez-Rodríguez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Interneuron Development Is Disrupted in Preterm Brains With Diffuse White Matter Injury: Observations in Mouse and Human

(2019) Helen B. Stolp et al.   Frontiers in Physiology

Decreased microglial Wnt/β-catenin signalling drives microglial pro-inflammatory activation in the developing brain

(2019) Juliette Van Steenwinckel et al.   BRAIN

Quantitative In vivo MRI Assessment of Structural Asymmetries and Sexual Dimorphism of Transient Fetal Compartments in the Human Brain

(2019) Lana Vasung et al.   CEREBRAL CORTEX

Hierarchical organization of cortical and thalamic connectivity

(2019) Julie A. Harris et al.   NATURE

MRtrix3: A fast, flexible and open software framework for medical image processing and visualisation

(2019) J-Donald Tournier et al.   NEUROIMAGE

Development of structure–function coupling in human brain networks during youth

(2019) Graham L. Baum et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Significant Effects of Maternal Diet During Pregnancy on the Murine Fetal Brain Transcriptome and Offspring Behavior

(2019) Andrea G. Edlow et al.   Frontiers in Neuroscience

Spatial transcriptomic survey of human embryonic cerebral cortex by single-cell RNA-seq analysis

(2018) Xiaoying Fan et al.   CELL RESEARCH

Imaging structural and functional brain development in early childhood

(2018) John H. Gilmore et al.   NATURE REVIEWS NEUROSCIENCE

Transcriptomic characterization of MRI contrast with focus on the T1-w/T2-w ratio in the cerebral cortex

(2018) Jacob Ritchie et al.   NEUROIMAGE

The developing human connectome project: A minimal processing pipeline for neonatal cortical surface reconstruction

(2018) Antonios Makropoulos et al.   NEUROIMAGE

Delineation of early brain development from fetuses to infants with diffusion MRI and beyond

(2018) Minhui Ouyang et al.   NEUROIMAGE

Different patterns of cortical maturation before and after 38 weeks gestational age demonstrated by diffusion MRI in vivo

(2018) Dafnis Batalle et al.   NEUROIMAGE

Multimodal surface matching with higher-order smoothness constraints

(2018) Emma C. Robinson et al.   NEUROIMAGE

Construction of a neonatal cortical surface atlas using Multimodal Surface Matching in the Developing Human Connectome Project

(2018) Jelena Bozek et al.   NEUROIMAGE

Shared molecular neuropathology across major psychiatric disorders parallels polygenic overlap

(2018) Michael J. Gandal et al.   SCIENCE

Large-Scale Gradients in Human Cortical Organization

(2018) Julia M. Huntenburg et al.   TRENDS IN COGNITIVE SCIENCES

Regional microstructural organization of the cerebral cortex is affected by preterm birth

(2018) Marine Bouyssi-Kobar et al.   NeuroImage-Clinical

Hierarchy of transcriptomic specialization across human cortex captured by structural neuroimaging topography

(2018) Joshua B. Burt et al.   NATURE NEUROSCIENCE

STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets

(2018) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Bridging the Gap between Connectome and Transcriptome

(2018) Alex Fornito et al.   TRENDS IN COGNITIVE SCIENCES

Three-dimensional motion corrected sensitivity encoding reconstruction for multi-shot multi-slice MRI: Application to neonatal brain imaging

(2017) Lucilio Cordero-Grande et al.   MAGNETIC RESONANCE IN MEDICINE

Time-efficient and flexible design of optimized multishell HARDI diffusion

(2017) Jana Hutter et al.   MAGNETIC RESONANCE IN MEDICINE

WebGestalt 2017: a more comprehensive, powerful, flexible and interactive gene set enrichment analysis toolkit

(2017) Jing Wang et al.   NUCLEIC ACIDS RESEARCH

The Reactome Pathway Knowledgebase

(2017) Antonio Fabregat et al.   NUCLEIC ACIDS RESEARCH

Machine learning shows association between genetic variability inPPARGand cerebral connectivity in preterm infants

(2017) Michelle L. Krishnan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Spatiotemporal gene expression trajectories reveal developmental hierarchies of the human cortex

(2017) Tomasz J. Nowakowski et al.   SCIENCE

The Indispensable Roles of Microglia and Astrocytes during Brain Development

(2016) Kitty Reemst et al.   Frontiers in Human Neuroscience

Hybrid-Space SENSE Reconstruction for Simultaneous Multi-Slice MRI

(2016) Kangrong Zhu et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

A dedicated neonatal brain imaging system

(2016) Emer J. Hughes et al.   MAGNETIC RESONANCE IN MEDICINE

The Cellular and Molecular Landscapes of the Developing Human Central Nervous System

(2016) John C. Silbereis et al.   NEURON

Situating the default-mode network along a principal gradient of macroscale cortical organization

(2016) Daniel S. Margulies et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structural Development of Human Fetal and Preterm Brain Cortical Plate Based on Population-Averaged Templates

(2015) Qiaowen Yu et al.   CEREBRAL CORTEX

Maturation of Sensori-Motor Functional Responses in the Preterm Brain

(2015) Alessandro G. Allievi et al.   CEREBRAL CORTEX

Diffusion MRI noise mapping using random matrix theory

(2015) Jelle Veraart et al.   MAGNETIC RESONANCE IN MEDICINE

Gibbs-ringing artifact removal based on local subvoxel-shifts

(2015) Elias Kellner et al.   MAGNETIC RESONANCE IN MEDICINE

Cortical thickness gradients in structural hierarchies

(2015) Konrad Wagstyl et al.   NEUROIMAGE

Longitudinal measurement of the developing grey matter in preterm subjects using multi-modal MRI

(2015) Zach Eaton-Rosen et al.   NEUROIMAGE

Correspondence between Resting-State Activity and Brain Gene Expression

(2015) Guang-Zhong Wang et al.   NEURON

Correlated gene expression supports synchronous activity in brain networks

(2015) J. Richiardi et al.   SCIENCE

Blood-brain barrier dysfunction in disorders of the developing brain

(2015) Raffaella Moretti et al.   Frontiers in Neuroscience

Automatic Whole Brain MRI Segmentation of the Developing Neonatal Brain

(2014) Antonios Makropoulos et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Transcriptional landscape of the prenatal human brain

(2014) Jeremy A. Miller et al.   NATURE

Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex

(2014) Alex A Pollen et al.   NATURE BIOTECHNOLOGY

MSM: A new flexible framework for Multimodal Surface Matching

(2014) Emma C. Robinson et al.   NEUROIMAGE

Assessing white matter microstructure of the newborn with multi-shell diffusion MRI and biophysical compartment models

(2014) Nicolas Kunz et al.   NEUROIMAGE

Temporal Specification and Bilaterality of Human Neocortical Topographic Gene Expression

(2014) Mihovil Pletikos et al.   NEURON

Microglia toxicity in preterm brain injury

(2014) Ana A. Baburamani et al.   REPRODUCTIVE TOXICOLOGY

Microglia Modulate Wiring of the Embryonic Forebrain

(2014) Paola Squarzoni et al.   Cell Reports

Sustained Activation of ERK1/2 MAPK in Oligodendrocytes and Schwann Cells Enhances Myelin Growth and Stimulates Oligodendrocyte Progenitor Expansion

(2013) A. Ishii et al.   JOURNAL OF NEUROSCIENCE

Notch-1 Signaling Regulates Microglia Activation via NF-κB Pathway after Hypoxic Exposure In Vivo and In Vitro

(2013) Linli Yao et al.   PLoS One

Development of cortical microstructure in the preterm human brain

(2013) Gareth Ball et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Removing technical variability in RNA-seq data using conditional quantile normalization

(2012) K. D. Hansen et al.   BIOSTATISTICS

Perinatal and early postnatal reorganization of the subplate and related cellular compartments in the human cerebral wall as revealed by histological and MRI approaches

(2012) Ivica Kostović et al.   Brain Structure & Function

Coupling Diffusion Imaging with Histological and Gene Expression Analysis to Examine the Dynamics of Cortical Areas across the Fetal Period of Human Brain Development

(2012) H. Huang et al.   CEREBRAL CORTEX

Reconstruction of fetal brain MRI with intensity matching and complete outlier removal

(2012) Maria Kuklisova-Murgasova et al.   MEDICAL IMAGE ANALYSIS

An anatomically comprehensive atlas of the adult human brain transcriptome

(2012) Michael J. Hawrylycz et al.   NATURE

Investigating white matter development in infancy and early childhood using myelin water faction and relaxation time mapping

(2012) Sean C.L. Deoni et al.   NEUROIMAGE

NODDI: Practical in vivo neurite orientation dispersion and density imaging of the human brain

(2012) Hui Zhang et al.   NEUROIMAGE

Effects of maternal immune activation on gene expression patterns in the fetal brain

(2012) K A Garbett et al.   Translational Psychiatry

Systemic hypoxia differentially affects neurogenesis during early mouse brain maturation

(2011) Christina Schneider et al.   BRAIN & DEVELOPMENT

The Effect of Preterm Birth on Thalamic and Cortical Development

(2011) G. Ball et al.   CEREBRAL CORTEX

Mapping Human Cortical Areas In Vivo Based on Myelin Content as Revealed by T1- and T2-Weighted MRI

(2011) M. F. Glasser et al.   JOURNAL OF NEUROSCIENCE

Spatio-temporal transcriptome of the human brain

(2011) Hyo Jung Kang et al.   NATURE

Temporal dynamics and genetic control of transcription in the human prefrontal cortex

(2011) Carlo Colantuoni et al.   NATURE

RSEQtools: a modular framework to analyze RNA-Seq data using compact, anonymized data summaries

(2010) Lukas Habegger et al.   BIOINFORMATICS

The Functional Architecture of the Infant Brain as Revealed by Resting-State fMRI

(2010) Peter Fransson et al.   CEREBRAL CORTEX

The role of Rho GTPase proteins in CNS neuronal migration

(2010) Eve-Ellen Govek et al.   Developmental Neurobiology

N4ITK: Improved N3 Bias Correction

(2010) Nicholas J Tustison et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Early microglial colonization of the human forebrain and possible involvement in periventricular white-matter injury of preterm infants

(2010) Catherine Verney et al.   JOURNAL OF ANATOMY

Dissociation of processing of featural and spatiotemporal information in the infant cortex

(2010) Teresa Wilcox et al.   NEUROIMAGE

Emergence of resting state networks in the preterm human brain

(2010) V. Doria et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

The function of RhoGTPases in axon ensheathment and myelination

(2008) M. Laura Feltri et al.   GLIA

Deletion of ERK2 Mitogen-Activated Protein Kinase Identifies Its Key Roles in Cortical Neurogenesis and Cognitive Function

(2008) I. S. Samuels et al.   JOURNAL OF NEUROSCIENCE

A Structural MRI Study of Human Brain Development from Birth to 2 Years

(2008) R. C. Knickmeyer et al.   JOURNAL OF NEUROSCIENCE

Development of the human cerebral cortex: Boulder Committee revisited

(2008) Irina Bystron et al.   NATURE REVIEWS NEUROSCIENCE

Hemodynamic response to visual stimulation in newborn infants using functional near-infrared spectroscopy

(2007) Tanja Karen et al.   HUMAN BRAIN MAPPING