Estimation of pathogenic potential of an environmental Pseudomonas aeruginosa isolate using comparative genomics

High quality 3C de novo assembly and annotation of a multidrug resistant ST-111 Pseudomonas aeruginosa genome: Benchmark of hybrid and non-hybrid assemblers

(2020) José Arturo Molina-Mora et al.   Scientific Reports

Transcriptomic determinants of the response of ST-111 Pseudomonas aeruginosa AG1 to ciprofloxacin identified by a top-down systems biology approach

(2020) José Arturo Molina-Mora et al.   Scientific Reports

Accessory genome of the multi-drug resistant ocular isolate of Pseudomonas aeruginosa PA34

(2019) Dinesh Subedi et al.   PLoS One

CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins

(2018) David Couvin et al.   NUCLEIC ACIDS RESEARCH

Spread of Carbapenem Resistance by Transposition and Conjugation Among Pseudomonas aeruginosa

(2018) Anneke van der Zee et al.   Frontiers in Microbiology

Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation

(2017) Sergey Koren et al.   GENOME RESEARCH

Host and Pathogen Biomarkers for Severe Pseudomonas aeruginosa Infections

(2017) Carlos Juan et al.   JOURNAL OF INFECTIOUS DISEASES

IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets

(2017) Claire Bertelli et al.   NUCLEIC ACIDS RESEARCH

Bow-tie signaling in c-di-GMP: Machine learning in a simple biochemical network

(2017) Jinyuan Yan et al.   PLoS Computational Biology

Experimental Induction of Bacterial Resistance to the Antimicrobial Peptide Tachyplesin I and Investigation of the Resistance Mechanisms

(2016) Jun Hong et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Strain- and Substrate-Dependent Redox Mediator and Electricity Production by Pseudomonas aeruginosa

(2016) Erick M. Bosire et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Description of genomic islands associated to the multidrug-resistant Pseudomonas aeruginosa clone ST277

(2016) Melise Chaves Silveira et al.   INFECTION GENETICS AND EVOLUTION

Prophages mediate defense against phage infection through diverse mechanisms

(2016) Joseph Bondy-Denomy et al.   ISME Journal

GIPSy: Genomic island prediction software

(2016) Siomar C. Soares et al.   JOURNAL OF BIOTECHNOLOGY

PHASTER: a better, faster version of the PHAST phage search tool

(2016) David Arndt et al.   NUCLEIC ACIDS RESEARCH

Identification of Novel Genomic Islands in Liverpool Epidemic Strain of Pseudomonas aeruginosa Using Segmentation and Clustering

(2016) Mehul Jani et al.   Frontiers in Microbiology

Genotypic and phenotypic analyses of a Pseudomonas aeruginosa chronic bronchiectasis isolate reveal differences from cystic fibrosis and laboratory strains

(2015) John J. Varga et al.   BMC GENOMICS

What It Takes to Be a Pseudomonas aeruginosa? The Core Genome of the Opportunistic Pathogen Updated

(2015) Benoît Valot et al.   PLoS One

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Characterization of the core and accessory genomes of Pseudomonas aeruginosa using bioinformatic tools Spine and AGEnt

(2014) Egon A Ozer et al.   BMC GENOMICS

Interclonal gradient of virulence in thePseudomonas aeruginosapangenome from disease and environment

(2014) Rolf Hilker et al.   ENVIRONMENTAL MICROBIOLOGY

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

A New Group of Phage Anti-CRISPR Genes Inhibits the Type I-E CRISPR-Cas System of Pseudomonas aeruginosa

(2014) A. Pawluk et al.   mBio

Consed: a graphical editor for next-generation sequencing

(2013) David Gordon et al.   BIOINFORMATICS

Pseudomonas aeruginosa adapts its iron uptake strategies in function of the type of infections

(2013) Pierre Cornelis et al.   Frontiers in Cellular and Infection Microbiology

Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria

(2012) M. V. Larsen et al.   JOURNAL OF CLINICAL MICROBIOLOGY

An rhs gene of Pseudomonas aeruginosa encodes a virulence protein that activates the inflammasome

(2012) V. L. Kung et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons

(2011) Nabil-Fareed Alikhan et al.   BMC GENOMICS

The Pseudomonas aeruginosa opportunistic pathogen and human infections

(2011) Sophie de Bentzmann et al.   ENVIRONMENTAL MICROBIOLOGY

PHAST: A Fast Phage Search Tool

(2011) Y. Zhou et al.   NUCLEIC ACIDS RESEARCH

Pseudomonas aeruginosa Genomic Structure and Diversity

(2011) Jens Klockgether et al.   Frontiers in Microbiology

Genetic and Functional Diversity of Pseudomonas aeruginosa Lipopolysaccharide

(2011) Joseph S. Lam et al.   Frontiers in Microbiology

Evolutionary and functional diversity of the Pseudomonas type IVa pilin island

(2010) Carmen L. Giltner et al.   ENVIRONMENTAL MICROBIOLOGY

Pathogenicity Islands PAPI-1 and PAPI-2 Contribute Individually and Synergistically to the Virulence of Pseudomonas aeruginosa Strain PA14

(2010) E. M. Harrison et al.   INFECTION AND IMMUNITY

The Accessory Genome of Pseudomonas aeruginosa

(2010) V. L. Kung et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

The Pseudomonas aeruginosa flagellum confers resistance to pulmonary surfactant protein-A by impacting the production of exoproteases through quorum-sensing

(2010) Zhizhou Kuang et al.   MOLECULAR MICROBIOLOGY

Complete Genome Sequence of the Multiresistant Taxonomic Outlier Pseudomonas aeruginosa PA7

(2010) Paul H. Roy et al.   PLoS One

IslandViewer: an integrated interface for computational identification and visualization of genomic islands

(2009) M. G. I. Langille et al.   BIOINFORMATICS

EDGAR: A software framework for the comparative analysis of prokaryotic genomes

(2009) Jochen Blom et al.   BMC BIOINFORMATICS

Genomic islands ofPseudomonas aeruginosa

(2008) Scott E. Battle et al.   FEMS MICROBIOLOGY LETTERS

Newly introduced genomic prophage islands are critical determinants of in vivo competitiveness in the Liverpool Epidemic Strain of Pseudomonas aeruginosa

(2008) C. Winstanley et al.   GENOME RESEARCH

Hybrid Pathogenicity Island PAGI-5 Contributes to the Highly Virulent Phenotype of a Pseudomonas aeruginosa Isolate in Mammals

(2008) S. E. Battle et al.   JOURNAL OF BACTERIOLOGY

Dynamics of Pseudomonas aeruginosa genome evolution

(2008) K. Mathee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA