Accessory genome of the multi-drug resistant ocular isolate of Pseudomonas aeruginosa PA34

CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins

(2018) David Couvin et al.   NUCLEIC ACIDS RESEARCH

Transposition Behavior Revealed by High-Resolution Description of Pseudomonas Aeruginosa Saltovirus Integration Sites

(2018) Gilles Vergnaud et al.   Viruses-Basel

Comparative genomics of clinical strains of Pseudomonas aeruginosa strains isolated from different geographic sites

(2018) Dinesh Subedi et al.   Scientific Reports

Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads

(2017) Ryan R. Wick et al.   PLoS Computational Biology

Xer Site Specific Recombination: Double and Single Recombinase Systems

(2017) Fabio Castillo et al.   Frontiers in Microbiology

Unraveling genomic and phenotypic nature of multidrug-resistant (MDR) Pseudomonas aeruginosa VRFPA04 isolated from keratitis patient

(2016) Murugan N. et al.   MICROBIOLOGICAL RESEARCH

NCBI prokaryotic genome annotation pipeline

(2016) Tatiana Tatusova et al.   NUCLEIC ACIDS RESEARCH

Genomic islands 1 and 2 play key roles in the evolution of extensively drug-resistant ST235 isolates ofPseudomonas aeruginosa

(2016) Piklu Roy Chowdhury et al.   Open Biology

Roary: rapid large-scale prokaryote pan genome analysis

(2015) Andrew J. Page et al.   BIOINFORMATICS

Enhanced annotations and features for comparing thousands ofPseudomonasgenomes in the Pseudomonas genome database

(2015) Geoffrey L. Winsor et al.   NUCLEIC ACIDS RESEARCH

Phylogenetic Distribution of CRISPR-Cas Systems in Antibiotic-Resistant Pseudomonas aeruginosa

(2015) Alex van Belkum et al.   mBio

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Characterization of the core and accessory genomes of Pseudomonas aeruginosa using bioinformatic tools Spine and AGEnt

(2014) Egon A Ozer et al.   BMC GENOMICS

The extensive set of accessoryPseudomonas aeruginosagenomic components

(2014) Sarah Pohl et al.   FEMS MICROBIOLOGY LETTERS

Comparative Genomics of Isolates of a Pseudomonas aeruginosa Epidemic Strain Associated with Chronic Lung Infections of Cystic Fibrosis Patients

(2014) Julie Jeukens et al.   PLoS One

Tracking antibiotic resistance

(2014) S. A. Beatson et al.   SCIENCE

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

(2013) Ross Overbeek et al.   NUCLEIC ACIDS RESEARCH

Draft genomes of 12 host-adapted and environmental isolates ofPseudomonas aeruginosaand their positions in the core genome phylogeny

(2013) Lewis Stewart et al.   Pathogens and Disease

Comparing thousands of circular genomes using the CGView Comparison Tool

(2012) Jason R Grant et al.   BMC GENOMICS

The limitations of draft assemblies for understanding prokaryotic adaptation and evolution

(2012) N. Ricker et al.   GENOMICS

Identification of acquired antimicrobial resistance genes

(2012) E. Zankari et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Primer3—new capabilities and interfaces

(2012) Andreas Untergasser et al.   NUCLEIC ACIDS RESEARCH

Easyfig: a genome comparison visualizer

(2011) M. J. Sullivan et al.   BIOINFORMATICS

Genetic Characterization Indicates that a Specific Subpopulation of Pseudomonas aeruginosa Is Associated with Keratitis Infections

(2011) R. M. K. Stewart et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Pseudomonas aeruginosa Genomic Structure and Diversity

(2011) Jens Klockgether et al.   Frontiers in Microbiology

ISsaga is an ensemble of web-based methods for high throughput identification and semi-automatic annotation of insertion sequences in prokaryotic genomes

(2011) Alessandro M Varani et al.   GENOME BIOLOGY

Pathogenicity Islands PAPI-1 and PAPI-2 Contribute Individually and Synergistically to the Virulence of Pseudomonas aeruginosa Strain PA14

(2010) E. M. Harrison et al.   INFECTION AND IMMUNITY

The Accessory Genome of Pseudomonas aeruginosa

(2010) V. L. Kung et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

ABACAS: algorithm-based automatic contiguation of assembled sequences

(2009) S. Assefa et al.   BIOINFORMATICS

The adsorption ofPseudomonas aeruginosabacteriophage φKMV is dependent on expression regulation of type IV pili genes

(2009) Andrew Chibeu et al.   FEMS MICROBIOLOGY LETTERS

Genes involved in copper resistance influence survival ofPseudomonas aeruginosaon copper surfaces

(2009) J. Elguindi et al.   JOURNAL OF APPLIED MICROBIOLOGY

Genome Diversity of Pseudomonas aeruginosa PAO1 Laboratory Strains

(2009) J. Klockgether et al.   JOURNAL OF BACTERIOLOGY

Expression of Pseudomonas aeruginosa CupD Fimbrial Genes Is Antagonistically Controlled by RcsB and the EAL-Containing PvrR Response Regulators

(2009) Helga Mikkelsen et al.   PLoS One

Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens

(2009) Mark W Silby et al.   GENOME BIOLOGY

Multidrug efflux transporters in the MATE family

(2008) Teruo Kuroda et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Newly introduced genomic prophage islands are critical determinants of in vivo competitiveness in the Liverpool Epidemic Strain of Pseudomonas aeruginosa

(2008) C. Winstanley et al.   GENOME RESEARCH

A Draft Genome Sequence ofPseudomonas syringaepv.tomatoT1 Reveals a Type III Effector Repertoire Significantly Divergent from That ofPseudomonas syringaepv.tomatoDC3000

(2008) Nalvo F. Almeida et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Dynamics of Pseudomonas aeruginosa genome evolution

(2008) K. Mathee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA