Uncovering dynamic evolution in the plastid genome of seven Ligusticum species provides insights into species discrimination and phylogenetic implications
Published 2021 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Uncovering dynamic evolution in the plastid genome of seven Ligusticum species provides insights into species discrimination and phylogenetic implications
Authors
Keywords
-
Journal
Scientific Reports
Volume 11, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2021-01-13
DOI
10.1038/s41598-020-80225-0
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Sequencing and Comparative Analysis of the Chloroplast Genome of Angelica polymorpha and the Development of a Novel Indel Marker for Species Identification
- (2019) Inkyu Park et al. MOLECULES
- Complete Chloroplast Genomes and Comparative Analysis of Sequences Evolution among Seven Aristolochia (Aristolochiaceae) Medicinal Species
- (2019) Xiaoqin Li et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes
- (2019) Stephan Greiner et al. NUCLEIC ACIDS RESEARCH
- Comparison of Four Complete Chloroplast Genomes of Medicinal and Ornamental Meconopsis Species: Genome Organization and Species Discrimination
- (2019) Xiaoxue Li et al. Scientific Reports
- Comparative Analysis of two Sugarcane Ancestors Saccharum officinarum and S. spontaneum based on Complete Chloroplast Genome Sequences and Photosynthetic Ability in Cold Stress
- (2019) Fu Xu et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Total duplication of the small single copy region in the angiosperm plastome: Rearrangement and inverted repeat instability in Asarum
- (2018) Brandon T. Sinn et al. AMERICAN JOURNAL OF BOTANY
- Plant organelle RNA editing and its specificity factors: enhancements of analyses and new database features in PREPACT 3.0
- (2018) Henning Lenz et al. BMC BIOINFORMATICS
- Chloroplast genome analyses and genomic resource development for epilithic sister genera Oresitrophe and Mukdenia (Saxifragaceae), using genome skimming data
- (2018) Luxian Liu et al. BMC GENOMICS
- Molecular Discrimination of Cynanchum wilfordii and Cynanchum auriculatum by InDel Markers of Chloroplast DNA
- (2018) Yonguk Kim et al. MOLECULES
- Comparative chloroplast genomics and phylogenetics of nine Lindera species (Lauraceae)
- (2018) Mei-Li Zhao et al. Scientific Reports
- Plastid super-barcodes as a tool for species discrimination in feather grasses (Poaceae: Stipa)
- (2018) Katarzyna Krawczyk et al. Scientific Reports
- Comparative Analyses of Chloroplast Genomes of Cucurbitaceae Species: Lights into Selective Pressures and Phylogenetic Relationships
- (2018) Xiao Zhang et al. MOLECULES
- Early photosynthetic eukaryotes inhabited low-salinity habitats
- (2017) Patricia Sánchez-Baracaldo et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Plastomes of Mimosoideae: structural and size variation, sequence divergence, and phylogenetic implication
- (2017) Yin-Huan Wang et al. Tree Genetics & Genomes
- Complete plastid genome of critically endangered plant Prangos trifida (Apiaceae: Apioideae)
- (2017) Tahir H. Samigullin et al. Conservation Genetics Resources
- Contentious relationships in phylogenomic studies can be driven by a handful of genes
- (2017) Xing-Xing Shen et al. Nature Ecology & Evolution
- Plastid genome of Seseli montanum: Complete sequence and comparison with plastomes of other members of the Apiaceae family
- (2016) T. H. Samigullin et al. BIOCHEMISTRY-MOSCOW
- Detecting and Characterizing the Highly Divergent Plastid Genome of the Nonphotosynthetic Parasitic PlantHydnora visseri(Hydnoraceae)
- (2016) Julia Naumann et al. Genome Biology and Evolution
- Locally and traditionally used Ligusticum species – A review of their phytochemistry, pharmacology and pharmacokinetics
- (2016) Paul Owusu Donkor et al. JOURNAL OF ETHNOPHARMACOLOGY
- MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets
- (2016) Sudhir Kumar et al. MOLECULAR BIOLOGY AND EVOLUTION
- A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution
- (2016) Massimo Iorizzo et al. NATURE GENETICS
- NOVOPlasty:de novoassembly of organelle genomes from whole genome data
- (2016) Nicolas Dierckxsens et al. NUCLEIC ACIDS RESEARCH
- The Complete Chloroplast Genome Sequences of Five Epimedium Species: Lights into Phylogenetic and Taxonomic Analyses
- (2016) Yanjun Zhang et al. Frontiers in Plant Science
- Complete Chloroplast Genome Sequence of Aquilaria sinensis (Lour.) Gilg and Evolution Analysis within the Malvales Order
- (2016) Ying Wang et al. Frontiers in Plant Science
- Chloroplast Genome Sequence of Pigeonpea (Cajanus cajan (L.) Millspaugh) and Cajanus scarabaeoides (L.) Thouars: Genome Organization and Comparison with Other Legumes
- (2016) Tanvi Kaila et al. Frontiers in Plant Science
- Endothelium-Independent Vasorelaxant Effect of Ligusticum jeholense Root and Rhizoma on Rat Thoracic Aorta
- (2015) Bumjung Kim et al. MOLECULES
- Evolutionary dynamics of the plastid inverted repeat: the effects of expansion, contraction, and loss on substitution rates
- (2015) Andan Zhu et al. NEW PHYTOLOGIST
- The Complete Sequence of the Acacia ligulata Chloroplast Genome Reveals a Highly Divergent clpP1 Gene
- (2015) Anna V. Williams et al. PLoS One
- A Comparative Analysis of Whole Plastid Genomes from the Apiales: Expansion and Contraction of the Inverted Repeat, Mitochondrial to Plastid Transfer of DNA, and Identification of Highly Divergent Noncoding Regions
- (2015) Stephen R. Downie et al. SYSTEMATIC BOTANY
- Relationships of wild and domesticated rices (Oryza AA genome species) based upon whole chloroplast genome sequences
- (2015) Peterson W. Wambugu et al. Scientific Reports
- The complete chloroplast genome provides insight into the evolution and polymorphism of Panax ginseng
- (2015) Yongbing Zhao et al. Frontiers in Plant Science
- ycf1, the most promising plastid DNA barcode of land plants
- (2015) Wenpan Dong et al. Scientific Reports
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- Thirteen Camellia chloroplast genome sequences determined by high-throughput sequencing: genome structure and phylogenetic relationships
- (2014) Hui Huang et al. BMC EVOLUTIONARY BIOLOGY
- Karyological studies of ten Ligusticum species (Apiaceae) from the Hengduan Mountains Region of China
- (2014) Zhou Jing et al. CARYOLOGIA
- Predominant and Substoichiometric Isomers of the Plastid Genome Coexist within Juniperus Plants and Have Shifted Multiple Times during Cupressophyte Evolution
- (2014) Wenhu Guo et al. Genome Biology and Evolution
- Comparative Chloroplast Genomes of Photosynthetic Orchids: Insights into Evolution of the Orchidaceae and Development of Molecular Markers for Phylogenetic Applications
- (2014) Jing Luo et al. PLoS One
- RNA Editing in Plants and Its Evolution
- (2013) Mizuki Takenaka et al. Annual Review of Genetics
- The complete chloroplast genome sequence of Mahonia bealei (Berberidaceae) reveals a significant expansion of the inverted repeat and phylogenetic relationship with other angiosperms
- (2013) Ji Ma et al. GENE
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- Highly rearranged and size-variable chloroplast genomes in conifers II clade (cupressophytes): evolution towards shorter intergenic spacers
- (2013) Chung-Shien Wu et al. PLANT BIOTECHNOLOGY JOURNAL
- The Complete Chloroplast Genome of Ginkgo biloba Reveals the Mechanism of Inverted Repeat Contraction
- (2012) C.-P. Lin et al. Genome Biology and Evolution
- Advances in the Chemical Analysis and Biological Activities of Chuanxiong
- (2012) Weixia Li et al. MOLECULES
- jModelTest 2: more models, new heuristics and parallel computing
- (2012) Diego Darriba et al. NATURE METHODS
- Highly Variable Chloroplast Markers for Evaluating Plant Phylogeny at Low Taxonomic Levels and for DNA Barcoding
- (2012) Wenpan Dong et al. PLoS One
- MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
- (2012) Fredrik Ronquist et al. SYSTEMATIC BIOLOGY
- Ligusticum chuanxiongHort: A review of chemistry and pharmacology
- (2011) Xia Ran et al. PHARMACEUTICAL BIOLOGY
- Inter-genomic relationships among three medicinal herbs: Cnidium officinale, Ligusticum chuanxiong and Angelica polymorpha
- (2010) Sang-Hoon Lee et al. Genes & Genomics
- Phylogenetic analyses of morphological and molecular data reveal major clades within the perennial, endemic western North American Apiaceae subfamily Apioideae1
- (2010) Feng-Jie Sun et al. JOURNAL OF THE TORREY BOTANICAL SOCIETY
- A duplicate gene rooting of seed plants and the phylogenetic position of flowering plants
- (2010) S. Mathews et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
- (2009) P. Librado et al. BIOINFORMATICS
- Towards a more robust molecular phylogeny of Chinese Apiaceae subfamily Apioideae: Additional evidence from nrDNA ITS and cpDNA intron (rpl16 and rps16) sequences
- (2009) Jing Zhou et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- The PREP suite: predictive RNA editors for plant mitochondrial genes, chloroplast genes and user-defined alignments
- (2009) J. P. Mower NUCLEIC ACIDS RESEARCH
- Authentication of the Oriental Medicinal PlantLigusticum tenuissimum(Nakai) Kitagawa (Korean Go-Bon) by Multiplex PCR
- (2009) Baigalmaa Jigden et al. PLANTA MEDICA
- Dynamics and evolution of the inverted repeat-large single copy junctions in the chloroplast genomes of monocots
- (2008) Rui-Jiang Wang et al. BMC EVOLUTIONARY BIOLOGY
- Morphological cladistic analysis ofLigusticum(Umbelliferae) in China
- (2008) Na Sun et al. NORDIC JOURNAL OF BOTANY
- Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis
- (2008) A. Loytynoja et al. SCIENCE
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started