Complete Chloroplast Genomes and Comparative Analysis of Sequences Evolution among Seven Aristolochia (Aristolochiaceae) Medicinal Species

Total duplication of the small single copy region in the angiosperm plastome: Rearrangement and inverted repeat instability in Asarum

(2018) Brandon T. Sinn et al.   AMERICAN JOURNAL OF BOTANY

The Complete Chloroplast Genome of Catha edulis: A Comparative Analysis of Genome Features with Related Species

(2018) Cuihua Gu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

(2018) Andrew Rambaut et al.   SYSTEMATIC BIOLOGY

Comparative chloroplast genomics of series Sakawanum in genus Asarum (Aristolochiaceae) to develop single nucleotide polymorphisms (SNPs) and simple sequence repeat (SSR) markers

(2018) Daiki Takahashi et al.   Journal of Forest Research

DNA barcoding of Aristolochia plants and development of species-specific multiplex PCR to aid HPTLC in ascertainment of Aristolochia herbal materials

(2018) Piroonrat Dechbumroong et al.   PLoS One

Molecular Structure and Phylogenetic Analyses of Complete Chloroplast Genomes of Two Aristolochia Medicinal Species

(2017) Jianguo Zhou et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

ModelFinder: fast model selection for accurate phylogenetic estimates

(2017) Subha Kalyaanamoorthy et al.   NATURE METHODS

GeSeq – versatile and accurate annotation of organelle genomes

(2017) Michael Tillich et al.   NUCLEIC ACIDS RESEARCH

Aristolochic acids and their derivatives are widely implicated in liver cancers in Taiwan and throughout Asia

(2017) Alvin W. T. Ng et al.   Science Translational Medicine

Application of a Simplified Method of Chloroplast Enrichment to Small Amounts of Tissue for Chloroplast Genome Sequencing

(2017) Shota Sakaguchi et al.   Applications in Plant Sciences

Comparative Analysis of the Complete Chloroplast Genome of Four Known Ziziphus Species

(2017) Jian Huang et al.   Genes

Complete chloroplast genome sequences of Lilium: insights into evolutionary dynamics and phylogenetic analyses

(2017) Yun-peng Du et al.   Scientific Reports

Plastid Phylogenomic Analyses Resolve Tofieldiaceae as the Root of the Early Diverging Monocot Order Alismatales

(2016) Yang Luo et al.   Genome Biology and Evolution

Rice Chloroplast Genome Variation Architecture and Phylogenetic Dissection in Diverse Oryza Species Assessed by Whole-Genome Resequencing

(2016) Wei Tong et al.   Rice

Intraspecific and heteroplasmic variations, gene losses and inversions in the chloroplast genome of Astragalus membranaceus

(2016) Wanjun Lei et al.   Scientific Reports

An integrated system for identifying the hidden assassins in traditional medicines containing aristolochic acids

(2015) Lan Wu et al.   Scientific Reports

ycf1, the most promising plastid DNA barcode of land plants

(2015) Wenpan Dong et al.   Scientific Reports

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Thirteen Camellia chloroplast genome sequences determined by high-throughput sequencing: genome structure and phylogenetic relationships

(2014) Hui Huang et al.   BMC EVOLUTIONARY BIOLOGY

A chloroplast genomic strategy for designing taxon specific DNA mini-barcodes: a case study on ginsengs

(2014) Wenpan Dong et al.   BMC GENETICS

The population genetic structure and diversification of Aristolochia delavayi (Aristolochiaceae), an endangered species of the dry hot valleys of the Jinsha River, southwestern China

(2014) Zhi-Yun Yang et al.   Botany

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Metabolomic Analysis of Complex Chinese Remedies: Examples of Induced Nephrotoxicity in the Mouse from a Series of Remedies Containing Aristolochic Acid

(2013) Dong-Ming Tsai et al.   Evidence-based Complementary and Alternative Medicine

Present trans-Pacific disjunct distribution ofAristolochiasubgenusIsotrema(Aristolochiaceae) was shaped by dispersal, vicariance and extinction

(2013) Favio González et al.   JOURNAL OF BIOGEOGRAPHY

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

OrganellarGenomeDRAW—a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets

(2013) Marc Lohse et al.   NUCLEIC ACIDS RESEARCH

Comparative Chloroplast Genomes of Camellia Species

(2013) Jun-Bo Yang et al.   PLoS One

Escaping the lianoid habit: Evolution of shrub-like growth forms in Aristolochia subgenus Isotrema (Aristolochiaceae)

(2012) Sarah T. Wagner et al.   AMERICAN JOURNAL OF BOTANY

CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences

(2012) Chang Liu et al.   BMC GENOMICS

Complete chloroplast genome sequence of Elodea canadensis and comparative analyses with other monocot plastid genomes

(2012) Tea Huotari et al.   GENE

Complete Chloroplast Genome Sequence of a Major Invasive Species, Crofton Weed (Ageratina adenophora)

(2012) Xiaojun Nie et al.   PLoS One

Highly Variable Chloroplast Markers for Evaluating Plant Phylogeny at Low Taxonomic Levels and for DNA Barcoding

(2012) Wenpan Dong et al.   PLoS One

Aristolochic acid-associated urothelial cancer in Taiwan

(2012) C.-H. Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic diversity of a rare species Aristolochia contorta Bunge (Aristolochiaceae) in Primorsky Krai

(2012) O. V. Nakonechnaya et al.   RUSSIAN JOURNAL OF GENETICS

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data

(2011) T. Carver et al.   BIOINFORMATICS

The evolution of the plastid chromosome in land plants: gene content, gene order, gene function

(2011) Susann Wicke et al.   PLANT MOLECULAR BIOLOGY

The Complete Chloroplast Genome Sequence of Date Palm (Phoenix dactylifera L.)

(2010) Meng Yang et al.   PLoS One

Mutational dynamics and phylogenetic utility of noncoding chloroplast DNA

(2009) Thomas Borsch et al.   PLANT SYSTEMATICS AND EVOLUTION

Genetic structure of natural populations of the relict species Aristolochia manshuriensis (Aristolochiaceae) in disturbed and intact habitats

(2009) O. G. Koren et al.   RUSSIAN JOURNAL OF GENETICS

Multiple hybridization in the Aristolochia kaempferi group (Aristolochiaceae): evidence from reproductive isolation and molecular phylogeny

(2008) Kana Watanabe et al.   AMERICAN JOURNAL OF BOTANY

Dynamics and evolution of the inverted repeat-large single copy junctions in the chloroplast genomes of monocots

(2008) Rui-Jiang Wang et al.   BMC EVOLUTIONARY BIOLOGY