Using metacommunity ecology to understand environmental metabolomes
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Title
Using metacommunity ecology to understand environmental metabolomes
Authors
Keywords
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Journal
Nature Communications
Volume 11, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2020-12-11
DOI
10.1038/s41467-020-19989-y
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Note: Only part of the references are listed.- Development and Comparison of Formula Assignment Algorithms for Ultrahigh-resolution Mass Spectra of Natural Organic Matter
- (2020) Qing-Long Fu et al. ANALYTICA CHIMICA ACTA
- Methane and nitrous oxide porewater concentrations and surface fluxes of a regulated river
- (2020) Jorge A. Villa et al. SCIENCE OF THE TOTAL ENVIRONMENT
- ftmsRanalysis: An R package for exploratory data analysis and interactive visualization of FT-MS data
- (2020) Lisa M. Bramer et al. PLoS Computational Biology
- Ecological Assembly Processes Are Coordinated between Bacterial and Viral Communities in Fractured Shale Ecosystems
- (2020) R. E. Danczak et al. mSystems
- Comparing the Influence of Assembly Processes Governing Bacterial Community Succession Based on DNA and RNA Data
- (2020) Xiu Jia et al. Microorganisms
- Does the Chemodiversity of Bacterial Exometabolomes Sustain the Chemodiversity of Marine Dissolved Organic Matter?
- (2019) Beatriz E. Noriega-Ortega et al. Frontiers in Microbiology
- ISiCLE: A Quantum Chemistry Pipeline for Establishing in Silico Collision Cross Section Libraries
- (2019) Sean M. Colby et al. ANALYTICAL CHEMISTRY
- Abiotic and Biotic Controls on Soil Organo–Mineral Interactions: Developing Model Structures to Analyze Why Soil Organic Matter Persists
- (2019) Dipankar Dwivedi et al. Reviews in Mineralogy & Geochemistry
- Freshwater microbial community diversity in a rapidly changing High Arctic watershed
- (2019) Maria Antonia Cavaco et al. FEMS MICROBIOLOGY ECOLOGY
- Chemical and microbial diversity covary in fresh water to influence ecosystem functioning
- (2019) Andrew J. Tanentzap et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Fundamental drivers of dissolved organic matter composition across an Arctic effective precipitation gradient
- (2019) Anne M. Kellerman et al. LIMNOLOGY AND OCEANOGRAPHY
- Moving beyond the van Krevelen Diagram: A New Stoichiometric Approach for Compound Classification in Organisms
- (2018) Albert Rivas-Ubach et al. ANALYTICAL CHEMISTRY
- ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R
- (2018) Emmanuel Paradis et al. BIOINFORMATICS
- Elevated [CO 2 ] changes soil organic matter composition and substrate diversity in an arid ecosystem
- (2018) Malak M. Tfaily et al. GEODERMA
- Soil pH mediates the balance between stochastic and deterministic assembly of bacteria
- (2018) Binu M. Tripathi et al. ISME Journal
- Multi 'omics comparison reveals metabolome biochemistry, not microbiome composition or gene expression, corresponds to elevated biogeochemical function in the hyporheic zone
- (2018) Emily B. Graham et al. SCIENCE OF THE TOTAL ENVIRONMENT
- Linking soil biology and chemistry in biological soil crust using isolate exometabolomics
- (2018) Tami L. Swenson et al. Nature Communications
- Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology
- (2018) James C. Stegen et al. Nature Communications
- Microbial Community Cohesion Mediates Community Turnover in Unperturbed Aquifers
- (2018) Robert E. Danczak et al. mSystems
- Universal molecular structures in natural dissolved organic matter
- (2018) Maren Zark et al. Nature Communications
- Root exudate metabolomes change under drought and show limited capacity for recovery
- (2018) Albert Gargallo-Garriga et al. Scientific Reports
- Two key features influencing community assembly processes at regional scale: Initial state and degree of change in environmental conditions
- (2018) Youzhi Feng et al. MOLECULAR ECOLOGY
- Assembly processes of trophic guilds in the root mycobiome of temperate forests
- (2018) Kristina Schröter et al. MOLECULAR ECOLOGY
- Abundant carbon substrates drive extremely high sulfate reduction rates and methane fluxes in Prairie Pothole Wetlands
- (2017) Paula Dalcin Martins et al. GLOBAL CHANGE BIOLOGY
- Carbon cycle confidence and uncertainty: Exploring variation among soil biogeochemical models
- (2017) William R. Wieder et al. GLOBAL CHANGE BIOLOGY
- Contrasting the relative importance of species sorting and dispersal limitation in shaping marine bacterial versus protist communities
- (2017) Wenxue Wu et al. ISME Journal
- Stochastic Community Assembly: Does It Matter in Microbial Ecology?
- (2017) Jizhong Zhou et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- Thermodynamically controlled preservation of organic carbon in floodplains
- (2017) Kristin Boye et al. Nature Geoscience
- Characterization of poplar metabotypes via mass difference enrichment analysis
- (2017) Franco Moritz et al. PLANT CELL AND ENVIRONMENT
- Differences in soluble organic carbon chemistry in pore waters sampled from different pore size domains
- (2017) V.L. Bailey et al. SOIL BIOLOGY & BIOCHEMISTRY
- Carbon Inputs From Riparian Vegetation Limit Oxidation of Physically Bound Organic Carbon Via Biochemical and Thermodynamic Processes
- (2017) Emily B. Graham et al. Journal of Geophysical Research-Biogeosciences
- Dispersal-Based Microbial Community Assembly Decreases Biogeochemical Function
- (2017) et al. Processes
- Evaluation of the Orbitrap Mass Spectrometer for the Molecular Fingerprinting Analysis of Natural Dissolved Organic Matter
- (2016) Jeffrey A. Hawkes et al. ANALYTICAL CHEMISTRY
- A guide to phylogenetic metrics for conservation, community ecology and macroecology
- (2016) Caroline M. Tucker et al. BIOLOGICAL REVIEWS
- Groundwater–surface water mixing shifts ecological assembly processes and stimulates organic carbon turnover
- (2016) James C. Stegen et al. Nature Communications
- ggtree: anrpackage for visualization and annotation of phylogenetic trees with their covariates and other associated data
- (2016) Guangchuang Yu et al. Methods in Ecology and Evolution
- Coupling among Microbial Communities, Biogeochemistry and Mineralogy across Biogeochemical Facies
- (2016) James C. Stegen et al. Scientific Reports
- VSEARCH: a versatile open source tool for metagenomics
- (2016) Torbjørn Rognes et al. PeerJ
- Advanced Solvent Based Methods for Molecular Characterization of Soil Organic Matter by High-Resolution Mass Spectrometry
- (2015) Malak M. Tfaily et al. ANALYTICAL CHEMISTRY
- pez: phylogenetics for the environmental sciences
- (2015) William D. Pearse et al. BIOINFORMATICS
- Terrestrial and marine perspectives on modeling organic matter degradation pathways
- (2015) Adrian B. Burd et al. GLOBAL CHANGE BIOLOGY
- The contentious nature of soil organic matter
- (2015) Johannes Lehmann et al. NATURE
- Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession
- (2015) Francisco Dini-Andreote et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Assembly of forest communities across East Asia – insights from phylogenetic community structure and species pool scaling
- (2015) Gang Feng et al. Scientific Reports
- The Gut Microbiota of Rural Papua New Guineans: Composition, Diversity Patterns, and Ecological Processes
- (2015) Inés Martínez et al. Cell Reports
- Estimating and mapping ecological processes influencing microbial community assembly
- (2015) James C. Stegen et al. Frontiers in Microbiology
- Chemodiversity of dissolved organic matter in lakes driven by climate and hydrology
- (2014) Anne M. Kellerman et al. Nature Communications
- Phylogenetic and structural response of heterotrophic bacteria to dissolved organic matter of different chemical composition in a continuous culture study
- (2013) M. Landa et al. ENVIRONMENTAL MICROBIOLOGY
- Quantifying community assembly processes and identifying features that impose them
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- Phylogenetic beta diversity in bacterial assemblages across ecosystems: deterministic versus stochastic processes
- (2013) Jianjun Wang et al. ISME Journal
- Patterns and Processes of Microbial Community Assembly
- (2013) D. R. Nemergut et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- Functional beta-diversity patterns reveal deterministic community assembly processes in eastern North American trees
- (2012) Andrew Siefert et al. GLOBAL ECOLOGY AND BIOGEOGRAPHY
- Stochastic and deterministic assembly processes in subsurface microbial communities
- (2012) James C Stegen et al. ISME Journal
- Phylogenetic conservatism of functional traits in microorganisms
- (2012) Adam C Martiny et al. ISME Journal
- Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
- (2012) J Gregory Caporaso et al. ISME Journal
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- (2012) Christian Quast et al. NUCLEIC ACIDS RESEARCH
- CREST – Classification Resources for Environmental Sequence Tags
- (2012) Anders Lanzén et al. PLoS One
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- (2012) Tamara Münkemüller et al. Methods in Ecology and Evolution
- Temporal turnover in the composition of tropical tree communities: functional determinism and phylogenetic stochasticity
- (2011) Nathan G. Swenson et al. ECOLOGY
- Degradation of natural organic matter: A thermodynamic analysis
- (2011) Douglas E. LaRowe et al. GEOCHIMICA ET COSMOCHIMICA ACTA
- Defining seasonal marine microbial community dynamics
- (2011) Jack A Gilbert et al. ISME Journal
- A simple and efficient method for the solid-phase extraction of dissolved organic matter (SPE-DOM) from seawater
- (2011) Thorsten Dittmar et al. LIMNOLOGY AND OCEANOGRAPHY-METHODS
- Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega
- (2011) F. Sievers et al. Molecular Systems Biology
- Disentangling the importance of ecological niches from stochastic processes across scales
- (2011) J. M. Chase et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Disentangling the Drivers of Diversity Along Latitudinal and Elevational Gradients
- (2011) N. J. B. Kraft et al. SCIENCE
- Using null models to disentangle variation in community dissimilarity from variation in α-diversity
- (2011) Jonathan M. Chase et al. Ecosphere
- Differential Growth Responses of Soil Bacterial Taxa to Carbon Substrates of Varying Chemical Recalcitrance
- (2011) Katherine C. Goldfarb et al. Frontiers in Microbiology
- Picante: R tools for integrating phylogenies and ecology
- (2010) S. W. Kembel et al. BIOINFORMATICS
- Phylogenetic community structure and phylogenetic turnover across space and edaphic gradients in western Amazonian tree communities
- (2010) Paul V. A. Fine et al. ECOGRAPHY
- UniFrac: an effective distance metric for microbial community comparison
- (2010) Catherine Lozupone et al. ISME Journal
- FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
- (2010) Morgan N. Price et al. PLoS One
- Conceptual Synthesis in Community Ecology
- (2010) Mark Vellend QUARTERLY REVIEW OF BIOLOGY
- BLAST+: architecture and applications
- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
- The merging of community ecology and phylogenetic biology
- (2009) Jeannine Cavender-Bares et al. ECOLOGY LETTERS
- The evolutionary ecology of metacommunities
- (2008) M URBAN et al. TRENDS IN ECOLOGY & EVOLUTION
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