Differential contribution of transcriptomic regulatory layers in the definition of neuronal identity
Published 2021 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Differential contribution of transcriptomic regulatory layers in the definition of neuronal identity
Authors
Keywords
-
Journal
Nature Communications
Volume 12, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2021-01-13
DOI
10.1038/s41467-020-20483-8
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Pathway-guided analysis identifies Myc-dependent alternative pre-mRNA splicing in aggressive prostate cancers
- (2020) John W. Phillips et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Integrative single-cell analysis
- (2019) Tim Stuart et al. NATURE REVIEWS GENETICS
- Landscape of ribosome-engaged transcript isoforms reveals extensive neuronal-cell-class-specific alternative splicing programs
- (2019) Elisabetta Furlanis et al. NATURE NEUROSCIENCE
- Alternative Splicing Regulatory Networks: Functions, Mechanisms, and Evolution
- (2019) Jernej Ule et al. MOLECULAR CELL
- The Human Transcription Factors
- (2018) Samuel A. Lambert et al. CELL
- Spatial transcriptomic survey of human embryonic cerebral cortex by single-cell RNA-seq analysis
- (2018) Xiaoying Fan et al. CELL RESEARCH
- Multi‐Omics Factor Analysis—a framework for unsupervised integration of multi‐omics data sets
- (2018) Ricard Argelaguet et al. Molecular Systems Biology
- Heterogeneity and specialized functions of translation machinery: from genes to organisms
- (2018) Naomi R. Genuth et al. NATURE REVIEWS GENETICS
- Alternative 3′ UTRs Modify the Localization, Regulatory Potential, Stability, and Plasticity of mRNAs in Neuronal Compartments
- (2018) Georgi Tushev et al. NEURON
- Efficient and Accurate Quantitative Profiling of Alternative Splicing Patterns of Any Complexity on a Laptop
- (2018) Timothy Sterne-Weiler et al. MOLECULAR CELL
- Rbfox1 Mediates Cell-type-Specific Splicing in Cortical Interneurons
- (2018) Brie Wamsley et al. NEURON
- An atlas of alternative splicing profiles and functional associations reveals new regulatory programs and genes that simultaneously express multiple major isoforms
- (2017) Javier Tapial et al. GENOME RESEARCH
- Single-Cell Alternative Splicing Analysis with Expedition Reveals Splicing Dynamics during Neuron Differentiation
- (2017) Yan Song et al. MOLECULAR CELL
- Salmon provides fast and bias-aware quantification of transcript expression
- (2017) Rob Patro et al. NATURE METHODS
- Genetic and activity-dependent mechanisms underlying interneuron diversity
- (2017) Brie Wamsley et al. NATURE REVIEWS NEUROSCIENCE
- Neuronal cell-type classification: challenges, opportunities and the path forward
- (2017) Hongkui Zeng et al. NATURE REVIEWS NEUROSCIENCE
- Activity-Dependent Regulation of Alternative Cleavage and Polyadenylation During Hippocampal Long-Term Potentiation
- (2017) Mariana M. Fontes et al. Scientific Reports
- Single-Cell RNA-Seq Reveals Hypothalamic Cell Diversity
- (2017) Renchao Chen et al. Cell Reports
- Cell-Type-Specific Alternative Splicing Governs Cell Fate in the Developing Cerebral Cortex
- (2016) Xiaochang Zhang et al. CELL
- Distal Alternative Last Exons Localize mRNAs to Neural Projections
- (2016) J. Matthew Taliaferro et al. MOLECULAR CELL
- The ribosome-engaged landscape of alternative splicing
- (2016) Robert J Weatheritt et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- In Situ Transcription Profiling of Single Cells Reveals Spatial Organization of Cells in the Mouse Hippocampus
- (2016) Sheel Shah et al. NEURON
- Spatial Gene-Expression Gradients Underlie Prominent Heterogeneity of CA1 Pyramidal Neurons
- (2016) Mark S. Cembrowski et al. NEURON
- g:Profiler—a web server for functional interpretation of gene lists (2016 update)
- (2016) Jüri Reimand et al. NUCLEIC ACIDS RESEARCH
- The ribosome-engaged landscape of alternative splicing
- (2016) Robert J Weatheritt et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- MECP2 Is Post-transcriptionally Regulated during Human Neurodevelopment by Combinatorial Action of RNA-Binding Proteins and miRNAs
- (2016) Deivid C. Rodrigues et al. Cell Reports
- An alternative splicing switch shapes neurexin repertoires in principal neurons versus interneurons in the mouse hippocampus
- (2016) Thi-Minh Nguyen et al. eLife
- Single-cell polyadenylation site mapping reveals 3' isoform choice variability
- (2015) L. Velten et al. Molecular Systems Biology
- Alternative Splicing in the Mammalian Nervous System: Recent Insights into Mechanisms and Functional Roles
- (2015) Bushra Raj et al. NEURON
- Alternative polyadenylation in the nervous system: To what lengths will 3′ UTR extensions take us?
- (2014) Pedro Miura et al. BIOESSAYS
- A Highly Conserved Program of Neuronal Microexons Is Misregulated in Autistic Brains
- (2014) Manuel Irimia et al. CELL
- Functional diversity along the transverse axis of hippocampal area CA1
- (2014) Kei M. Igarashi et al. FEBS LETTERS
- Widespread intron retention in mammals functionally tunes transcriptomes
- (2014) Ulrich Braunschweig et al. GENOME RESEARCH
- Functional organization of the hippocampal longitudinal axis
- (2014) Bryan A. Strange et al. NATURE REVIEWS NEUROSCIENCE
- Global 3′ UTR shortening has a limited effect on protein abundance in proliferating T cells
- (2014) Andreas R. Gruber et al. Nature Communications
- Ubiquitously transcribed genes use alternative polyadenylation to achieve tissue-specific expression
- (2013) S. Lianoglou et al. GENES & DEVELOPMENT
- Widespread and extensive lengthening of 3' UTRs in the mammalian brain
- (2013) P. Miura et al. GENOME RESEARCH
- A compendium of RNA-binding motifs for decoding gene regulation
- (2013) Debashish Ray et al. NATURE
- The Central Dogma Decentralized: New Perspectives on RNA Function and Local Translation in Neurons
- (2013) Christine E. Holt et al. NEURON
- Alternative pre-mRNA splicing in neurons: growing up and extending its reach
- (2013) Sika Zheng et al. TRENDS IN GENETICS
- Insights into RNA Biology from an Atlas of Mammalian mRNA-Binding Proteins
- (2012) Alfredo Castello et al. CELL
- GENCODE: The reference human genome annotation for The ENCODE Project
- (2012) J. Harrow et al. GENOME RESEARCH
- Tissue-Specific Alternative Splicing Remodels Protein-Protein Interaction Networks
- (2012) Jonathan D. Ellis et al. MOLECULAR CELL
- Analysis of alternative cleavage and polyadenylation by 3′ region extraction and deep sequencing
- (2012) Mainul Hoque et al. NATURE METHODS
- The Local Transcriptome in the Synaptic Neuropil Revealed by Deep Sequencing and High-Resolution Imaging
- (2012) Iván J. Cajigas et al. NEURON
- The remarkable, yet not extraordinary, human brain as a scaled-up primate brain and its associated cost
- (2012) S. Herculano-Houzel PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Evolutionary Dynamics of Gene and Isoform Regulation in Mammalian Tissues
- (2012) J. Merkin et al. SCIENCE
- The Evolutionary Landscape of Alternative Splicing in Vertebrate Species
- (2012) N. L. Barbosa-Morais et al. SCIENCE
- Temporal dynamics and genetic control of transcription in the human prefrontal cortex
- (2011) Carlo Colantuoni et al. NATURE
- Spatial Representation along the Proximodistal Axis of CA1
- (2010) Espen J. Henriksen et al. NEURON
- Enrichment Map: A Network-Based Method for Gene-Set Enrichment Visualization and Interpretation
- (2010) Daniele Merico et al. PLoS One
- Pre-mRNA Processing Reaches Back toTranscription and Ahead to Translation
- (2009) Melissa J. Moore et al. CELL
- Equal numbers of neuronal and nonneuronal cells make the human brain an isometrically scaled-up primate brain
- (2009) Frederico A.C. Azevedo et al. JOURNAL OF COMPARATIVE NEUROLOGY
- Alternative isoform regulation in human tissue transcriptomes
- (2008) Eric T. Wang et al. NATURE
- Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
- (2008) Qun Pan et al. NATURE GENETICS
- Genomic Anatomy of the Hippocampus
- (2008) Carol L. Thompson et al. NEURON
- An Ancient Duplication of Exon 5 in the Snap25 Gene Is Required for Complex Neuronal Development/Function
- (2008) Jenny U. Johansson et al. PLoS Genetics
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started