Gut microbiome dysbiosis and correlation with blood biomarkers in active-tuberculosis in endemic setting

The unique composition of Indian gut microbiome, gene catalogue, and associated fecal metabolome deciphered using multi-omics approaches

(2019) D B Dhakan et al.   GigaScience

The Gut Microbiome Signatures Discriminate Healthy From Pulmonary Tuberculosis Patients

(2019) Yongfei Hu et al.   Frontiers in Cellular and Infection Microbiology

Correlation between Disease Severity and the Intestinal Microbiome in Mycobacterium tuberculosis-Infected Rhesus Macaques

(2019) Sivaranjani Namasivayam et al.   mBio

Comparative Analysis of Fecal Microbiota Composition Between Rheumatoid Arthritis and Osteoarthritis Patients

(2019) Jin-Young Lee et al.   Genes

Eggerthella lenta Bloodstream Infections Are Associated With Increased Mortality Following Empiric Piperacillin-Tazobactam (TZP) Monotherapy: A Population-based Cohort Study

(2018) Alejandra Ugarte-Torres et al.   CLINICAL INFECTIOUS DISEASES

Synbiotics Bifidobacterium infantis and milk oligosaccharides are effective in reversing cancer-prone nonalcoholic steatohepatitis using western diet-fed FXR knockout mouse models

(2018) Prasant Kumar Jena et al.   JOURNAL OF NUTRITIONAL BIOCHEMISTRY

Gut bacteria selectively promoted by dietary fibers alleviate type 2 diabetes

(2018) Liping Zhao et al.   SCIENCE

Gut microbiota associated with pulmonary tuberculosis and dysbiosis caused by anti-tuberculosis drugs

(2018) Yongfeng Hu et al.   JOURNAL OF INFECTION

Bifidobacterium adolescentis is intrinsically resistant to antitubercular drugs

(2018) Dhanashree Lokesh et al.   Scientific Reports

Gut microbiome contributes to impairment of immunity in pulmonary tuberculosis patients by alteration of butyrate and propionate producers

(2017) Abhijit Maji et al.   ENVIRONMENTAL MICROBIOLOGY

Bifidobacterium Bacteremia: Clinical Characteristics and a Genomic Approach To Assess Pathogenicity

(2017) Eirin Esaiassen et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Hepatic inflammation caused by dysregulated bile acid synthesis is reversible by butyrate supplementation

(2017) Lili Sheng et al.   JOURNAL OF PATHOLOGY

MicrobiomeAnalyst: a web-based tool for comprehensive statistical, visual and meta-analysis of microbiome data

(2017) Achal Dhariwal et al.   NUCLEIC ACIDS RESEARCH

Field evaluation of a blood based test for active tuberculosis in endemic settings

(2017) Aasia Khaliq et al.   PLoS One

Meta-analysis of gut microbiome studies identifies disease-specific and shared responses

(2017) Claire Duvallet et al.   Nature Communications

The gut microbiota as a modulator of innate immunity during melioidosis

(2017) Jacqueline M. Lankelma et al.   PLoS Neglected Tropical Diseases

Longitudinal profiling reveals a persistent intestinal dysbiosis triggered by conventional anti-tuberculosis therapy

(2017) Sivaranjani Namasivayam et al.   Microbiome

A novel ultra high-throughput 16S rRNA gene amplicon sequencing library preparation method for the Illumina HiSeq platform

(2017) Eric J. de Muinck et al.   Microbiome

Differences in Gut Metabolites and Microbial Composition and Functions between Egyptian and U.S. Children Are Consistent with Their Diets

(2017) V. Shankar et al.   mSystems

Autoimmunity and autoinflammation: A systems view on signaling pathway dysregulation profiles

(2017) Arsen Arakelyan et al.   PLoS One

Gender Differences in Bile Acids and Microbiota in Relationship with Gender Dissimilarity in Steatosis Induced by Diet and FXR Inactivation

(2017) Lili Sheng et al.   Scientific Reports

Dysbiosis in chronic periodontitis: Key microbial players and interactions with the human host

(2017) Zhi-Luo Deng et al.   Scientific Reports

Antibiotic treatment for Tuberculosis induces a profound dysbiosis of the microbiome that persists long after therapy is completed

(2017) Matthew F. Wipperman et al.   Scientific Reports

A Functional Role for Antibodies in Tuberculosis

(2016) Lenette L. Lu et al.   CELL

Reduced Abundance of Butyrate-Producing Bacteria Species in the Fecal Microbial Community in Crohn's Disease

(2016) Kenichiro Takahashi et al.   DIGESTION

Microbiome diversity in the sputum of patients with pulmonary tuberculosis

(2016) P. Krishna et al.   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

The effect of heritability and host genetics on the gut microbiota and metabolic syndrome

(2016) Mi Young Lim et al.   GUT

Colonic inflammation accompanies an increase of β-catenin signaling and Lachnospiraceae / Streptococcaceae bacteria in the hind gut of high-fat diet-fed mice

(2016) Huawei Zeng et al.   JOURNAL OF NUTRITIONAL BIOCHEMISTRY

An expansion of rare lineage intestinal microbes characterizes rheumatoid arthritis

(2016) Jun Chen et al.   Genome Medicine

An Improved Methodology to Overcome Key Issues in Human Fecal Metagenomic DNA Extraction

(2016) Jitendra Kumar et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

B cells and antibodies in the defense againstMycobacterium tuberculosisinfection

(2015) Jacqueline M. Achkar et al.   IMMUNOLOGICAL REVIEWS

Fat, fibre and cancer risk in African Americans and rural Africans

(2015) Stephen J. D. O’Keefe et al.   Nature Communications

Microbial imbalance and intestinal pathologies: connections and contributions

(2014) Y. Yang et al.   Disease Models & Mechanisms

TLR5-Mediated Sensing of Gut Microbiota Is Necessary for Antibody Responses to Seasonal Influenza Vaccination

(2014) Jason Z. Oh et al.   IMMUNITY

Plasma antibody profiles in non-human primate tuberculosis

(2014) Resmi Ravindran et al.   JOURNAL OF MEDICAL PRIMATOLOGY

Diet, microbiota, and microbial metabolites in colon cancer risk in rural Africans and African Americans

(2013) Junhai Ou et al.   AMERICAN JOURNAL OF CLINICAL NUTRITION

The Immune Response in Tuberculosis

(2013) Anne O'Garra et al.   Annual Review of Immunology

Exploratory Study on Plasma Immunomodulator and Antibody Profiles in Tuberculosis Patients

(2013) Resmi Ravindran et al.   Clinical and Vaccine Immunology

A decrease of the butyrate-producing speciesRoseburia hominisandFaecalibacterium prausnitziidefines dysbiosis in patients with ulcerative colitis

(2013) Kathleen Machiels et al.   GUT

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

Is butyrate the link between diet, intestinal microbiota and obesity-related metabolic diseases?

(2013) L. K. Brahe et al.   Obesity Reviews

Sputum Microbiota in Tuberculosis as Revealed by 16S rRNA Pyrosequencing

(2013) Man Kit Cheung et al.   PLoS One

Butyrate

(2012) Alda J. Leonel et al.   CURRENT OPINION IN CLINICAL NUTRITION AND METABOLIC CARE

Commensal Bacteria Calibrate the Activation Threshold of Innate Antiviral Immunity

(2012) Michael C. Abt et al.   IMMUNITY

Gut microbiome composition is linked to whole grain-induced immunological improvements

(2012) Inés Martínez et al.   ISME Journal

A metagenome-wide association study of gut microbiota in type 2 diabetes

(2012) Junjie Qin et al.   NATURE

Antibiotics in early life alter the murine colonic microbiome and adiposity

(2012) Ilseung Cho et al.   NATURE

How glycan metabolism shapes the human gut microbiota

(2012) Nicole M. Koropatkin et al.   NATURE REVIEWS MICROBIOLOGY

Plasma Antibody Profiles as Diagnostic Biomarkers for Tuberculosis

(2011) Imran H. Khan et al.   Clinical and Vaccine Immunology

Mycobacterium Tuberculosis Infection and Inflammation: what is Beneficial for the Host and for the Bacterium?

(2011) Smitha J. Sasindran et al.   Frontiers in Microbiology

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

The immunology of tuberculosis: From bench to bedside

(2010) Keertan DHEDA et al.   RESPIROLOGY

Cell-Mediated Immune Responses in Tuberculosis

(2009) Andrea M. Cooper   Annual Review of Immunology

Mycobacterium tuberculosis and the Macrophage: Maintaining a Balance

(2008) Jean Pieters   Cell Host & Microbe

Tuberculosis in Africa: Learning from Pathogenesis for Biomarker Identification

(2008) Stefan H.E. Kaufmann et al.   Cell Host & Microbe

Innate immunity in tuberculosis: myths and truth

(2008) Daniel S. Korbel et al.   MICROBES AND INFECTION