CATH: increased structural coverage of functional space

A SARS-CoV-2 protein interaction map reveals targets for drug repurposing

(2020) David E. Gordon et al.   NATURE

SARS-CoV-2 spike protein predicted to form complexes with host receptor protein orthologues from a broad range of mammals

(2020) S. D. Lam et al.   Scientific Reports

A CATH domain functional family based approach to identify putative cancer driver genes and driver mutations

(2019) Paul Ashford et al.   Scientific Reports

cath-resolve-hits: a new tool that resolves domain matches suspiciously quickly

(2018) T E Lewis et al.   BIOINFORMATICS

UniProt: a worldwide hub of protein knowledge

(2018)   NUCLEIC ACIDS RESEARCH

CATH: expanding the horizons of structure-based functional annotations for genome sequences

(2018) Ian Sillitoe et al.   NUCLEIC ACIDS RESEARCH

Gene3D: Extensive prediction of globular domains in proteins

(2017) Tony E Lewis et al.   NUCLEIC ACIDS RESEARCH

Landscape of activating cancer mutations in FGFR kinases and their differential responses to inhibitors in clinical use

(2016) Harshnira Patani et al.   Oncotarget

Functional classification of CATH superfamilies: a domain-based approach for protein function annotation

(2015) Sayoni Das et al.   BIOINFORMATICS

Aquaria: simplifying discovery and insight from protein structures

(2015) Seán I O'Donoghue et al.   NATURE METHODS

The GOA database: Gene Ontology annotation updates for 2015

(2014) Rachael P. Huntley et al.   NUCLEIC ACIDS RESEARCH

Protein function prediction using domain families

(2013) Robert Rentzsch et al.   BMC BIOINFORMATICS

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions

(2013) Jaina Mistry et al.   NUCLEIC ACIDS RESEARCH