The transcriptional repressors VAL1 and VAL2 recruit PRC2 for genome-wide Polycomb silencing in Arabidopsis

HSI2/VAL1 and HSL1/VAL2 function redundantly to repress DOG1 expression in Arabidopsis seeds and seedlings

(2020) Naichong Chen et al.   NEW PHYTOLOGIST

Molecular Mechanisms Directing PRC2 Recruitment and H3K27 Methylation

(2019) Anne Laugesen et al.   MOLECULAR CELL

The B3-domain Transcription Factor VAL1 Regulates the Floral Transition by Repressing FLOWERING LOCUS T

(2019) Yanjun Jing et al.   PLANT PHYSIOLOGY

The Complexity of PRC2 Subcomplexes

(2019) Guido van Mierlo et al.   TRENDS IN CELL BIOLOGY

Structural insight into the role of VAL1 B3 domain for targeting to FLC locus in Arabidopsis thaliana

(2018) Baixing Wu et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Telobox motifs recruit CLF/SWN–PRC2 for H3K27me3 deposition via TRB factors in Arabidopsis

(2018) Yue Zhou et al.   NATURE GENETICS

Structural basis of DNA target recognition by the B3 domain of Arabidopsis epigenome reader VAL1

(2018) Giedrius Sasnauskas et al.   NUCLEIC ACIDS RESEARCH

HSI2/VAL1 SilencesAGL15to Regulate the Developmental Transition from Seed Maturation to Vegetative Growth in Arabidopsis

(2018) Naichong Chen et al.   PLANT CELL

LjCOCH interplays with LjAPP1 to maintain the nodule development in Lotus japonicus

(2018) Yu-Chen Liu et al.   PLANT GROWTH REGULATION

Histone deacetylases HDA6 and HDA9 coordinately regulate valve cell elongation through affecting auxin signaling in Arabidopsis

(2018) Liangbing Yuan et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Regulation of FUSCA3 Expression During Seed Development in Arabidopsis

(2018) Thomas James Roscoe et al.   PLANT AND CELL PHYSIOLOGY

Cis and trans determinants of epigenetic silencing by Polycomb repressive complex 2 in Arabidopsis

(2017) Jun Xiao et al.   NATURE GENETICS

LEC1 sequentially regulates the transcription of genes involved in diverse developmental processes during seed development

(2017) Julie M. Pelletier et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Distinct phases of Polycomb silencing to hold epigenetic memory of cold inArabidopsis

(2017) Hongchun Yang et al.   SCIENCE

A cis cold memory element and a trans epigenome reader mediate Polycomb silencing of FLC by vernalization in Arabidopsis

(2016) Wenya Yuan et al.   NATURE GENETICS

Concerted genomic targeting of H3K27 demethylase REF6 and chromatin-remodeling ATPase BRM in Arabidopsis

(2016) Chenlong Li et al.   NATURE GENETICS

deepTools2: a next generation web server for deep-sequencing data analysis

(2016) Fidel Ramírez et al.   NUCLEIC ACIDS RESEARCH

Potential targets of VIVIPAROUS1/ABI3-LIKE1 (VAL1) repression in developingArabidopsis thalianaembryos

(2016) Andrew Schneider et al.   PLANT JOURNAL

Arabidopsis transcriptional repressor VAL1 triggers Polycomb silencing at FLC during vernalization

(2016) Julia I. Qüesta et al.   SCIENCE

Role of the Polycomb Repressive Complex 2 (PRC2) in Transcriptional Regulation and Cancer

(2016) Anne Laugesen et al.   Cold Spring Harbor Perspectives in Medicine

Arabidopsis Flower and Embryo Developmental Genes are Repressed in Seedlings by Different Combinations of Polycomb Group Proteins in Association with Distinct Sets of Cis-regulatory Elements

(2016) Hua Wang et al.   PLoS Genetics

LHP1 Regulates H3K27me3 Spreading and Shapes the Three-Dimensional Conformation of the Arabidopsis Genome

(2016) Alaguraj Veluchamy et al.   PLoS One

The Polycomb Group Protein Regulatory Network

(2015) Iva Mozgova et al.   Annual Review of Plant Biology

ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization

(2015) Guangchuang Yu et al.   BIOINFORMATICS

Targeting Polycomb systems to regulate gene expression: modifications to a complex story

(2015) Neil P. Blackledge et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

ClustVis: a web tool for visualizing clustering of multivariate data using Principal Component Analysis and heatmap

(2015) Tauno Metsalu et al.   NUCLEIC ACIDS RESEARCH

Complementary activities of TELOMERE REPEAT BINDING proteins and Polycomb Group complexes in transcriptional regulation of target genes

(2015) Yue Zhou et al.   PLANT CELL

The Arabidopsis GAGA-Binding Factor BASIC PENTACYSTEINE6 Recruits the POLYCOMB-REPRESSIVE COMPLEX1 Component LIKE HETEROCHROMATIN PROTEIN1 to GAGA DNA Motifs

(2015) Andreas Hecker et al.   PLANT PHYSIOLOGY

The Arabidopsis SWI2/SNF2 Chromatin Remodeler BRAHMA Regulates Polycomb Function during Vegetative Development and Directly Activates the Flowering Repressor Gene SVP

(2015) Chenlong Li et al.   PLoS Genetics

Regulation of gene transcription by Polycomb proteins

(2015) S. Aranda et al.   Science Advances

HSI2/VAL1 PHD-like domain promotes H3K27 trimethylation to repress the expression of seed maturation genes and complex transgenes in Arabidopsis seedlings

(2014) Vijaykumar Veerappan et al.   BMC PLANT BIOLOGY

Transcriptional Silencing by Polycomb-Group Proteins

(2014) U. Grossniklaus et al.   Cold Spring Harbor Perspectives in Biology

GAT: a simulation framework for testing the association of genomic intervals

(2013) A. Heger et al.   BIOINFORMATICS

VAL- and AtBMI1-Mediated H2Aub Initiate the Switch from Embryonic to Postgerminative Growth in Arabidopsis

(2013) Chao Yang et al.   CURRENT BIOLOGY

Arabidopsis MSI1 connects LHP1 to PRC2 complexes

(2013) Maria Derkacheva et al.   EMBO JOURNAL

The ASYMMETRIC LEAVES complex maintains repression of KNOX homeobox genes via direct recruitment of Polycomb-repressive complex2

(2013) M. Lodha et al.   GENES & DEVELOPMENT

HISTONE DEACETYLASE19 Interacts with HSL1 and Participates in the Repression of Seed Maturation Genes inArabidopsisSeedlings

(2013) Yi Zhou et al.   PLANT CELL

Distinct Roles of LAFL Network Genes in Promoting the Embryonic Seedling Fate in the Absence of VAL Repression

(2013) H. Jia et al.   PLANT PHYSIOLOGY

Regulation of the seed to seedling developmental phase transition by the LAFL and VAL transcription factor networks

(2013) Haiyan Jia et al.   Wiley Interdisciplinary Reviews-Developmental Biology

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

A novel HSI2 mutation in Arabidopsis affects the PHD-like domain and leads to derepression of seed-specific gene expression

(2012) Vijaykumar Veerappan et al.   PLANTA

MAnorm: a robust model for quantitative comparison of ChIP-Seq data sets

(2012) Zhen Shao et al.   GENOME BIOLOGY

MEME-ChIP: motif analysis of large DNA datasets

(2011) Philip Machanick et al.   BIOINFORMATICS

The Polycomb complex PRC2 and its mark in life

(2011) Raphaël Margueron et al.   NATURE

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

(2011) Philippe Lamesch et al.   NUCLEIC ACIDS RESEARCH

Transcriptional Regulation ofArabidopsis LEAFY COTYLEDON2InvolvesRLE, acis-Element That Regulates Trimethylation of Histone H3 at Lysine-27

(2011) Nathalie Berger et al.   PLANT CELL

Histone Methylation in Higher Plants

(2010) Chunyan Liu et al.   Annual Review of Plant Biology

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Mechanisms of Polycomb gene silencing: knowns and unknowns

(2009) Jeffrey A. Simon et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY