CoolMPS: evaluation of antibody labeling based massively parallel non-coding RNA sequencing

MiR-335-5p inhibits β-Amyloid (Aβ) accumulation to attenuate cognitive deficits through targeting c-jun-N-terminal kinase 3 in alzheimer's disease

(2020) Dan Wang et al.   CURRENT NEUROVASCULAR RESEARCH

miEAA 2.0: integrating multi-species microRNA enrichment analysis and workflow management systems

(2020) Fabian Kern et al.   NUCLEIC ACIDS RESEARCH

Quo vadis microRNAs?

(2020) Bastian Fromm et al.   TRENDS IN GENETICS

Differential blood miRNA expression in brain amyloid imaging-defined Alzheimer’s disease and controls

(2020) Helen Zong Ying Wu et al.   Alzheimers Research & Therapy

An estimate of the total number of true human miRNAs

(2019) Julia Alles et al.   NUCLEIC ACIDS RESEARCH

Scientists rise up against statistical significance

(2019) Valentin Amrhein et al.   NATURE

The sncRNA Zoo: a repository for circulating small noncoding RNAs in animals

(2019) Tobias Fehlmann et al.   NUCLEIC ACIDS RESEARCH

Systematic assessment of commercially available low-input miRNA library preparation kits

(2019) Fatima Heinicke et al.   RNA Biology

Comparative Analysis of Biochemical Biases by Ligation- and Template-Switch-Based Small RNA Library Preparation Protocols

(2019) Morgane Meistertzheim et al.   CLINICAL CHEMISTRY

MirGeneDB 2.0: the metazoan microRNA complement

(2019) Bastian Fromm et al.   NUCLEIC ACIDS RESEARCH

DynaVenn: web-based computation of the most significant overlap between ordered sets

(2019) Jérémy Amand et al.   BMC BIOINFORMATICS

miR-16-5p and miR-19b-3p prevent amyloid β-induced injury by targeting BACE1 in SH-SY5Y cells

(2019) Nan Zhang et al.   NEUROREPORT

Small ncRNA-Seq Results of Human Tissues: Variations Depending on Sample Integrity

(2018) Nicole Ludwig et al.   CLINICAL CHEMISTRY

piRBase: a comprehensive database of piRNA sequences

(2018) Jiajia Wang et al.   NUCLEIC ACIDS RESEARCH

miRBase: from microRNA sequences to function

(2018) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

Web-based NGS data analysis using miRMaster: a large-scale meta-analysis of human miRNAs

(2017) Tobias Fehlmann et al.   NUCLEIC ACIDS RESEARCH

miRCarta: a central repository for collecting miRNA candidates

(2017) Christina Backes et al.   NUCLEIC ACIDS RESEARCH

Validating Alzheimer's disease micro RNAs using next-generation sequencing

(2016) Andreas Keller et al.   Alzheimers & Dementia

Complex heatmaps reveal patterns and correlations in multidimensional genomic data

(2016) Zuguang Gu et al.   BIOINFORMATICS

miEAA: microRNA enrichment analysis and annotation

(2016) Christina Backes et al.   NUCLEIC ACIDS RESEARCH

Exploring ncRNAs in Alzheimer’s disease by miRMaster

(2016) Tobias Fehlmann et al.   Oncotarget

cPAS-based sequencing on the BGISEQ-500 to explore small non-coding RNAs

(2016) Tobias Fehlmann et al.   Clinical Epigenetics

GtRNAdb 2.0: an expanded database of transfer RNA genes identified in complete and draft genomes

(2015) Patricia P. Chan et al.   NUCLEIC ACIDS RESEARCH

Prioritizing and selecting likely novel miRNAs from NGS data

(2015) Christina Backes et al.   NUCLEIC ACIDS RESEARCH

Altered microRNA profiles in cerebrospinal fluid exosome in Parkinson disease and Alzheimer disease

(2015) YaXing Gui et al.   Oncotarget

Plasma Exosomal miRNAs in Persons with and without Alzheimer Disease: Altered Expression and Prospects for Biomarkers

(2015) Giovanni Lugli et al.   PLoS One

Single-cell RNA-seq: advances and future challenges

(2014) Antoine-Emmanuel Saliba et al.   NUCLEIC ACIDS RESEARCH

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

The Next-Generation Sequencing Revolution and Its Impact on Genomics

(2013) Daniel C. Koboldt et al.   CELL

Circulating miRNA Biomarkers for Alzheimer's Disease

(2013) Pavan Kumar et al.   PLoS One

GENCODE: The reference human genome annotation for The ENCODE Project

(2012) J. Harrow et al.   GENOME RESEARCH

GenBank

(2012) Dennis A. Benson et al.   NUCLEIC ACIDS RESEARCH

pROC: an open-source package for R and S+ to analyze and compare ROC curves

(2011) Xavier Robin et al.   BMC BIOINFORMATICS

miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades

(2011) Marc R. Friedländer et al.   NUCLEIC ACIDS RESEARCH

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Discovering microRNAs from deep sequencing data using miRDeep

(2008) Marc R Friedländer et al.   NATURE BIOTECHNOLOGY