Web-based NGS data analysis using miRMaster: a large-scale meta-analysis of human miRNAs

Validating Alzheimer's disease micro RNAs using next-generation sequencing

(2016) Andreas Keller et al.   Alzheimers & Dementia

Bias in High-Throughput Analysis of miRNAs and Implications for Biomarker Studies

(2016) Christina Backes et al.   ANALYTICAL CHEMISTRY

Deep characterization of blood cell miRNomes by NGS

(2016) Eva C. Schwarz et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

miEAA: microRNA enrichment analysis and annotation

(2016) Christina Backes et al.   NUCLEIC ACIDS RESEARCH

Distribution of miRNA expression across human tissues

(2016) Nicole Ludwig et al.   NUCLEIC ACIDS RESEARCH

Distribution of microRNA biomarker candidates in solid tissues and body fluids

(2016) Tobias Fehlmann et al.   RNA Biology

miR-isomiRExp: a web-server for the analysis of expression of miRNA at the miRNA/isomiR levels

(2016) Li Guo et al.   Scientific Reports

Influence of Next-Generation Sequencing and Storage Conditions on miRNA Patterns Generated from PAXgene Blood

(2015) Christina Backes et al.   ANALYTICAL CHEMISTRY

Double-Stranded Ligation Assay for the Rapid Multiplex Quantification of MicroRNAs

(2015) Stefan Hofmann et al.   ANALYTICAL CHEMISTRY

A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome

(2015) Bastian Fromm et al.   Annual Review of Genetics

MicroRNA In Vitro Diagnostics Using Immunoassay Analyzers

(2015) A. Kappel et al.   CLINICAL CHEMISTRY

Differentially regulated miRNAs as prognostic biomarkers in the blood of primary CNS lymphoma patients

(2015) Patrick Roth et al.   EUROPEAN JOURNAL OF CANCER

Next-generation sequencing identifies altered whole blood microRNAs in neuromyelitis optica spectrum disorder which may permit discrimination from multiple sclerosis

(2015) Andreas Keller et al.   Journal of Neuroinflammation

The Menu of Features that Define Primary MicroRNAs and Enable De Novo Design of MicroRNA Genes

(2015) Wenwen Fang et al.   MOLECULAR CELL

N6-methyladenosine marks primary microRNAs for processing

(2015) Claudio R. Alarcón et al.   NATURE

A legion of potential regulatory sRNAs exists beyond the typical microRNAs microcosm

(2015) Ashwani Jha et al.   NUCLEIC ACIDS RESEARCH

GtRNAdb 2.0: an expanded database of transfer RNA genes identified in complete and draft genomes

(2015) Patricia P. Chan et al.   NUCLEIC ACIDS RESEARCH

Prioritizing and selecting likely novel miRNAs from NGS data

(2015) Christina Backes et al.   NUCLEIC ACIDS RESEARCH

Bioinformatic tools for microRNA dissection

(2015) Most Mauluda Akhtar et al.   NUCLEIC ACIDS RESEARCH

DIANA-miRPath v3.0: deciphering microRNA function with experimental support

(2015) Ioannis S. Vlachos et al.   NUCLEIC ACIDS RESEARCH

miRTarBase 2016: updates to the experimentally validated miRNA-target interactions database

(2015) Chih-Hung Chou et al.   NUCLEIC ACIDS RESEARCH

NONCODE 2016: an informative and valuable data source of long non-coding RNAs

(2015) Yi Zhao et al.   NUCLEIC ACIDS RESEARCH

sRNAtoolbox: an integrated collection of small RNA research tools

(2015) Antonio Rueda et al.   NUCLEIC ACIDS RESEARCH

Ensembl 2016

(2015) Andrew Yates et al.   NUCLEIC ACIDS RESEARCH

Analysis of 13 cell types reveals evidence for the expression of numerous novel primate- and tissue-specific microRNAs

(2015) Eric Londin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MAGI: a Node.js web service for fast microRNA-Seq analysis in a GPU infrastructure

(2014) Jihoon Kim et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

miRNAs can be generally associated with human pathologies as exemplified for miR-144*

(2014) Andreas Keller et al.   BMC Medicine

Evaluation of quantitative miRNA expression platforms in the microRNA quality control (miRQC) study

(2014) Pieter Mestdagh et al.   NATURE METHODS

Evolutionary history of plant microRNAs

(2014) Richard S. Taylor et al.   TRENDS IN PLANT SCIENCE

piRBase: a web resource assisting piRNA functional study

(2014) Peng Zhang et al.   Database-The Journal of Biological Databases and Curation

Evidence for the biogenesis of more than 1,000 novel human microRNAs

(2014) Marc R Friedländer et al.   GENOME BIOLOGY

Beyond Secondary Structure: Primary-Sequence Determinants License Pri-miRNA Hairpins for Processing

(2013) Vincent C. Auyeung et al.   CELL

Deep sequencing of small RNAs identifies canonical and non-canonical miRNA and endogenous siRNAs in mammalian somatic tissues

(2013) Leandro Castellano et al.   NUCLEIC ACIDS RESEARCH

RefSeq microbial genomes database: new representation and annotation strategy

(2013) Tatiana Tatusova et al.   NUCLEIC ACIDS RESEARCH

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

A blood based 12-miRNA signature of Alzheimer disease patients

(2013) Petra Leidinger et al.   GENOME BIOLOGY

Do miRNAs have a deep evolutionary history?

(2012) James E. Tarver et al.   BIOESSAYS

Heterogeneous ensemble approach with discriminative features and modified-SMOTEbagging for pre-miRNA classification

(2012) Supatcha Lertampaiporn et al.   NUCLEIC ACIDS RESEARCH

Rfam 11.0: 10 years of RNA families

(2012) Sarah W. Burge et al.   NUCLEIC ACIDS RESEARCH

NCBI GEO: archive for functional genomics data sets—update

(2012) Tanya Barrett et al.   NUCLEIC ACIDS RESEARCH

Are all the miRBase-registered microRNAs true?

(2012) Yijun Meng et al.   RNA Biology

ViennaRNA Package 2.0

(2011) Ronny Lorenz et al.   Algorithms for Molecular Biology

miRanalyzer: an update on the detection and analysis of microRNAs in high-throughput sequencing experiments

(2011) M. Hackenberg et al.   NUCLEIC ACIDS RESEARCH

Conservation and divergence in plant microRNAs

(2011) Matthew W. Jones-Rhoades   PLANT MOLECULAR BIOLOGY

Mammalian microRNAs: experimental evaluation of novel and previously annotated genes

(2010) H. R. Chiang et al.   GENES & DEVELOPMENT

microPred: effective classification of pre-miRNAs for human miRNA gene prediction

(2009) Rukshan Batuwita et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Biogenesis of small RNAs in animals

(2009) V. Narry Kim et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs

(2008) J. E. Babiarz et al.   GENES & DEVELOPMENT

Self Containment, a Property of Modular RNA Structures, Distinguishes microRNAs

(2008) Miler T. Lee et al.   PLoS Computational Biology