RNA nucleation by MSL2 induces selective X chromosome compartmentalization

RNA contributions to the form and function of biomolecular condensates

(2020) Christine Roden et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Dosage Compensation of the X Chromosome: A Complex Epigenetic Assignment Involving Chromatin Regulators and Long Noncoding RNAs

(2018) Maria Samata et al.   Annual Review of Biochemistry

The Role of Phase Separation in Heterochromatin Formation, Function, and Regulation

(2018) Adam G. Larson et al.   BIOCHEMISTRY

EasyFRAP-web: a web-based tool for the analysis of fluorescence recovery after photobleaching data

(2018) Grigorios Koulouras et al.   NUCLEIC ACIDS RESEARCH

RNA polymerase II clustering through carboxy-terminal domain phase separation

(2018) Marc Boehning et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Facultative dosage compensation of developmental genes on autosomes in Drosophila and mouse embryonic stem cells

(2018) Claudia Isabelle Keller Valsecchi et al.   Nature Communications

The Gene Ontology Resource: 20 years and still GOing strong

(2018)   NUCLEIC ACIDS RESEARCH

RNA-on-X 1 and 2 in Drosophila melanogaster fulfill separate functions in dosage compensation

(2018) Maria Kim et al.   PLoS Genetics

Phase separation drives heterochromatin domain formation

(2017) Amy R. Strom et al.   NATURE

The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy

(2017) Björn A. Grüning et al.   NUCLEIC ACIDS RESEARCH

MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins

(2017) Damiano Piovesan et al.   NUCLEIC ACIDS RESEARCH

Toxic PR Poly-Dipeptides Encoded by the C9orf72 Repeat Expansion Target LC Domain Polymers

(2016) Yi Lin et al.   CELL

Rapid evolutionary turnover underlies conserved lncRNA–genome interactions

(2016) Jeffrey J. Quinn et al.   GENES & DEVELOPMENT

PionX sites mark the X chromosome for dosage compensation

(2016) Raffaella Villa et al.   NATURE

Functional interplay between MSL1 and CDK7 controls RNA polymerase II Ser5 phosphorylation

(2016) Sarantis Chlamydas et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

deepTools2: a next generation web server for deep-sequencing data analysis

(2016) Fidel Ramírez et al.   NUCLEIC ACIDS RESEARCH

Functional interplay between MSL1 and CDK7 controls RNA polymerase II Ser5 phosphorylation

(2016) Sarantis Chlamydas et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

High-Affinity Sites Form an Interaction Network to Facilitate Spreading of the MSL Complex across the X Chromosome in Drosophila

(2015) Fidel Ramírez et al.   MOLECULAR CELL

Dosage Compensation inDrosophila

(2015) John C. Lucchesi et al.   Cold Spring Harbor Perspectives in Biology

Single-Step Generation of Conditional Knockout Mouse Embryonic Stem Cells

(2015) Matyas Flemr et al.   Cell Reports

A simple method for generating high-resolution maps of genome-wide protein binding

(2015) Peter J Skene et al.   eLife

Structural basis of X chromosome DNA recognition by the MSL2 CXC domain duringDrosophiladosage compensation

(2014) Sanduo Zheng et al.   GENES & DEVELOPMENT

Non-coding roX RNAs Prevent the Binding of the MSL-complex to Heterochromatic Regions

(2014) Margarida L. A. Figueiredo et al.   PLoS Genetics

MOF-associated complexes ensure stem cell identity and Xist repression

(2014) Tomasz Chelmicki et al.   eLife

Tandem Stem-Loops in roX RNAs Act Together to Mediate X Chromosome Dosage Compensation in Drosophila

(2013) Ibrahim Avsar Ilik et al.   MOLECULAR CELL

Generation of a Useful roX1 Allele by Targeted Gene Conversion

(2013) Manasi S. Apte et al.   G3-Genes Genomes Genetics

Cell-free Formation of RNA Granules: Low Complexity Sequence Domains Form Dynamic Fibers within Hydrogels

(2012) Masato Kato et al.   CELL

Msl1-Mediated Dimerization of the Dosage Compensation Complex Is Essential for Male X-Chromosome Regulation in Drosophila

(2012) Erinc Hallacli et al.   MOLECULAR CELL

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Role of Low-Complexity Sequences in the Formation of Novel Protein Coding Sequences

(2011) M. Toll-Riera et al.   MOLECULAR BIOLOGY AND EVOLUTION

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Statistical Properties of the Branch-Site Test of Positive Selection

(2010) Z. Yang et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Nonspecific Lethal Complex Is a Transcriptional Regulator in Drosophila

(2010) Sunil Jayaramaiah Raja et al.   MOLECULAR CELL

The DNA binding CXC domain of MSL2 is required for faithful targeting the Dosage Compensation Complex to the X chromosome

(2010) Torsten Fauth et al.   NUCLEIC ACIDS RESEARCH

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Polytene chromosome squash methods for studying transcription and epigenetic chromatin modification in Drosophila using antibodies

(2009) Kristen M. Johansen et al.   METHODS

BioVenn – a web application for the comparison and visualization of biological lists using area-proportional Venn diagrams

(2008) Tim Hulsen et al.   BMC GENOMICS

A Sequence Motif within Chromatin Entry Sites Directs MSL Establishment on the Drosophila X Chromosome

(2008) Artyom A. Alekseyenko et al.   CELL

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY